Poseidonibacter lekithochrous: ALEK_2918
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Entry
ALEK_2918 CDS
T06860
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alk
Poseidonibacter lekithochrous
Pathway
alk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ALEK_2918 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alk03021
]
ALEK_2918 (rpoC)
03400 DNA repair and recombination proteins [BR:
alk03400
]
ALEK_2918 (rpoC)
Enzymes [BR:
alk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ALEK_2918 (rpoC)
Transcription machinery [BR:
alk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ALEK_2918 (rpoC)
DNA repair and recombination proteins [BR:
alk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ALEK_2918 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QKJ24141
LinkDB
All DBs
Position
complement(3013751..3018283)
Genome browser
AA seq
1510 aa
AA seq
DB search
MSNNEKILEPIEIKELERPTDFSAFQLRLASPEKILSWSSGEVKKPETINYRTLKPERDG
LFCAKIFGPVKDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRHRMGHIDLVSPVAHIW
MVSSLPTRIGTLLGVKLKDLERVLYYEAYIVSEAGEAFYDNEKTKKVSKFDILNEEQYRT
ISDLFEHTGFEADMGGQVVRDLLETLDLFELLTKLKEEMAGTKSEAKRKTIIKRLKVVEN
FINSGNRPEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEKRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPTLNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKSAKRLIESETN
EVWECLNEIVDEYPVLLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCAAFNADFDGDQM
AVHVPLSQEAVAEAKILMMSSMNILLPASGRAIAVPSQDMILGIYYLSLEKDGVKGEHKL
FTGVNEARIALEMGQVDLHAKIRTKIDNKVIHTTVGRLIVHEILPEFVPLNLWNKILKKK
DIGILVDYIYKHGGYEVTPKFLDNLKNLGFRYATDAGISVSIDDIRVPESKVGHIASSKK
EVIEVQKQFGQGLLTEQERYNKIIDIWTEVNNKLGSEMMNLVEQDKNGFNSIYMMADSGA
RGSAAQIRQLSGMRGLMAKPDGTIIETPIISNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITIEDCGTHEGIEITDISSGNELIEALEERITGRVIAEDIID
PISNEILFTEGTLITEEDAKVVADAEVKAVTIRTPLTCKVEHGLCSKCYGLNLGEQRKAT
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASATQTERELRADKEGFIRYYNIKTYIDRD
GKSIVANRRNAGILLVEPKINAPFKGNVTVETLHEEIILTLANGKDEKKYYLRKNDVAKA
NELAGVSGKIEGKLYLPYRDGIEVEENESIVEMIKDGWNVPNRIPFASELRVADGAPITS
KITSGAKGTVKYYKLTGDYLERKEDIKAGYTVVEKGLFAVVVDGEGREALRHYIARGSKV
ELDDNVNVEKESMIAVPETTEQVVIAEWDPYSNPSIAEQEGIISFEDIIPGVTVSEQFDE
LTGTSKLVLNEYIPSGYKPTVLLATEDKDIIRYSLDPKTSLNVAEGQKVQVADVIGKTPK
ATQKSKDITGGLPRVSELFEARRPKSIAVLASFDGMVSFGKPLRNKSRIIITDEHGKKGE
FLVEKSKQILVHEGEFVHAGEALTDGQTSPHDVLRILGEKALHYFIVSEVQQVYRSQGVN
IADKHIEVITSQMLRQVSILDGGDTKFIIGDMISKKRFKIENERIIKLGGEPAIAEPLLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDK
KIKFSYPDEQ
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataatgaaaaaatattagaaccaattgaaattaaagaattagaaagaccgaca
gatttctcggcctttcaattaagacttgcaagtcctgaaaaaattctatcttggtcatct
ggggaagtaaaaaaaccagagactattaactatagaacacttaagcctgaaagagatggt
ttattttgtgctaagatttttggaccagtaaaagattacgaatgtctttgtggtaaatac
aaaaagatgagatacaaaggtgttgtatgtgaaaaatgtggtgttgaagtaacttcttca
aaagttagaagacacagaatgggacatattgatttagtatctcctgttgcacacatttgg
atggtatcatctttaccaactagaattggtactttattaggtgttaaattaaaagacctt
gagagagtattatattacgaagcatacattgtttctgaagctggtgaagcattctatgat
aacgaaaaaactaaaaaagtttcaaaattcgatatcttaaatgaagaacaatacagaaca
atctctgatttatttgaacatactggttttgaagctgatatgggtggacaagttgtaaga
gatttattagaaactttagacttatttgaattattaactaagttaaaagaagaaatggct
ggaactaaatcagaagctaaaagaaaaactattatcaaaagattaaaagttgttgaaaac
tttattaactctggaaatagacctgaatggatgatgttaactcagttaccagttcttcca
ccagatttaagaccattagtatctttagatggtggtaaatttgctgtttctgatgttaat
gacctttatagaagagtaattaacagaaataacagacttaagagattaacagaacttgat
gcacctgaaatcattattagaaatgaaaaaagaatgcttcaagaggcagttgatgcttta
tttgataatggtaaaacagctaacgcagttaagggtgctaataaaagacctttaaaatct
ttatctgaaattattaaaggtaaacaaggaagatttagacaaaacttacttggaaaaaga
gttgacttctctggtagatctgtaattgttgttggacctactttaaatatggaccaatgt
ggtattcctaagaaaatggctcttgagttatttaaaccacatttaatggctaaacttgaa
gaaaaaggttatgcaactacattaaaatctgcaaagagattaattgagtctgaaactaat
gaagtttgggaatgtttaaatgaaatcgttgatgaatatccagtattactgaatagagcg
ccaactcttcataaactttctattcaagcgttccacccagttttaattgatgggaaagct
attagattacatccactagtttgtgctgccttcaatgccgatttcgatggggatcaaatg
gccgttcacgttccattatcacaagaagctgtagctgaagctaagattcttatgatgtct
tctatgaatattcttttacctgcatcaggtcgtgcaattgccgtaccttctcaggatatg
attttaggtatttactacctatcattagaaaaagatggtgtaaaaggtgaacataaatta
ttcactggtgtaaatgaagctagaattgctcttgaaatgggtcaagttgatttacatgca
aaaattagaactaagattgacaacaaagttattcatacaactgttggtagattaattgtt
catgaaattttacctgagtttgtacctttaaacttatggaacaagattttaaagaaaaaa
gatatcggtattttagttgattatatctacaaacatggtggatatgaagtaactccaaaa
ttcttagataacttaaagaacttaggtttcagatatgcaactgatgctggtatttctgta
tcaattgatgatattagagttcctgaatcaaaagttggacatattgcttcttctaaaaaa
gaagtaatcgaagttcaaaaacaatttggtcaaggtttattaactgagcaagaaagatat
aataagattattgatatctggactgaagttaacaacaagcttggttctgaaatgatgaac
ttagttgagcaagataaaaatggattcaactctatttatatgatggctgattctggggct
agaggttctgctgcacagattagacagttatcaggtatgaggggtcttatggcaaagcca
gatgggactattattgaaactccaattatttcaaacttccgagaaggtctaaatgtactt
gagtactttatttctactcacggtgctagaaaaggtcttgcggatacagctcttaaaaca
gccaatgcagggtacttaacaagaaaactaattgatgtatctcaaaacgttagaattaca
attgaagattgtggtactcacgaaggtattgaaattactgatatttcttctggtaatgaa
ttaattgaagcattagaagagagaatcacaggtagagttattgctgaagatatcattgat
cctatttcaaatgagattcttttcactgagggtactttaattactgaggaagatgcaaaa
gttgttgctgatgctgaagtaaaagctgttactattagaacaccattaacttgtaaagtt
gaacatggtttatgttctaaatgttatggtcttaacttaggtgagcaaagaaaagcaact
cctggtgaagcagttggtgttgttgccgctcaatctattggtgagccaggaacacagctt
acacttagaactttccacgttggtggtactgcaagtgctactcaaactgagagagaatta
agagctgataaagaaggtttcattagatactacaacattaaaacttatattgacagagat
ggaaaatctatcgttgctaatagaagaaatgctggtatcttattagttgagcctaaaatt
aatgcaccatttaaaggtaatgttacagtagaaactcttcacgaagagattattttaact
ttagctaatggtaaagatgagaaaaaatactacttaagaaagaatgacgttgctaaagct
aatgagcttgcaggtgtatctggaaaaattgaaggtaaattatacttaccttatagagat
ggtattgaagtagaagaaaatgaatcaatcgttgagatgatcaaagatggttggaatgtt
ccaaacagaattcctttcgcttctgaattaagagttgctgatggagctcctattacttct
aaaatcacttctggtgctaaaggtacagttaaatattacaaattaactggcgattactta
gagagaaaagaagatattaaagctggttatacagttgttgaaaaaggtttatttgctgtt
gttgttgatggtgaaggtagagaagctttaagacactatattgctagaggttctaaagtt
gagttagatgataacgtaaacgttgaaaaagaatctatgattgctgttcctgaaactaca
gaacaagtagttattgcagaatgggatccgtactcgaatccttcaattgcagaacaagaa
ggtattatctcatttgaagatattattcctggtgttactgtttctgagcaattcgatgaa
ttaactggtacttctaaattagtacttaatgaatatatcccaagtggttataagcctaca
gttcttttagcaactgaagataaagatattattagatattcattagaccctaaaacatca
ttaaatgttgcagaaggtcaaaaagtacaagttgcagatgttattggtaaaacaccaaaa
gcaactcaaaaatcgaaagatattactgggggtcttccaagagtatctgagttatttgaa
gcaagaagacctaagtcaattgctgtattagcatcatttgacggaatggtttcatttggt
aaaccattaagaaataaatctagaattatcattactgatgaacatggtaagaagggtgaa
ttcttagtagaaaaatctaagcaaattttagtacacgaaggtgagttcgttcatgctggt
gaggcattaactgatggtcaaacatctcctcatgatgtattaagaatcttaggtgaaaaa
gcattacattacttcattgtatctgaagtacagcaagtatatagatctcaaggggtaaat
attgctgataaacatattgaggttattacatctcaaatgttaagacaagtttctatctta
gatggtggagacactaaatttattattggagatatgatctctaagaaaagatttaaaatt
gagaatgaaagaattattaaattaggtggagaacctgcaattgctgaaccattattactt
ggtattacaagagcggctgttacatctgattctattatttctgctgcatcattccaagag
actactaaagtattaacagaggctgcaatttcagctaaaatggatatgttagaagactta
aaagaaaacgttgttattggtagaacaattcctgttggaactggtctatacaaagataag
aaaattaaattttcttatccagatgagcaataa
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integrated database retrieval system
