Poseidonibacter lekithochrous: ALEK_3014
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Entry
ALEK_3014 CDS
T06860
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alk
Poseidonibacter lekithochrous
Pathway
alk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALEK_3014 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alk03019
]
ALEK_3014 (recQ)
03400 DNA repair and recombination proteins [BR:
alk03400
]
ALEK_3014 (recQ)
Enzymes [BR:
alk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ALEK_3014 (recQ)
Messenger RNA biogenesis [BR:
alk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALEK_3014 (recQ)
DNA repair and recombination proteins [BR:
alk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ALEK_3014 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Motif
Other DBs
NCBI-ProteinID:
QKJ24226
LinkDB
All DBs
Position
complement(3109922..3112024)
Genome browser
AA seq
700 aa
AA seq
DB search
MNTKQEILKNIFGHDNFRSFQEEVVDSILSKQDVLTILPTGGGKSLCYQLPTLLMDGITV
VISPLIALMQDQVKALNDLDIEASMISSSQTPDENGFTMQKLLAGQLKFVYVAPERFTSN
EFVSVLQRVNINYFVIDEAHCVSGWGHEFRAEYRNLNRLKQFFPDTCIAAFTATATKKVE
ADIANNLNLVNAKHFRAKTQRDNLDIKVEPRIANGKSQILNFLKSHRGLCGIIYTFTRKE
AESTAQFLVDNGYKSKAYHAGLSAERKDEVFNDFVYENVDIVVATIAFGMGIDKSNIRFV
IHTSLPKTLENYYQEIGRAGRDGAMSYVYLLYSKGDEVKRKIQIEDSIDDSYKQTGLDKL
EFMYRYCVSNNCRHKIIASYFEDEIDECNTLCDNCTKGEIAQVDVSVEAQKFLSAVYRSE
QRFGTNHIIDILRGSKNQKLLEFGHEQLKVYGLGKDKSKNEWVAIADKLIDMQAVNLGEF
RVLKLNALGMDILKGNQKLLMDEDKLGIAIKQEESQEVLSFDEELYEKFRSLRRQMASEH
EVPAYVIFGDKSLKEFSSKLPTTKEEMLEVNGVGLKKFEKYGEEFLNLCKDIKEEFKEKI
ETRAPLKKLTKTYTDTYELLQEGNSLEDIAQKRDLGLTSVLSHVNLLNEHEKISKEKKEE
LLKPLEVSDEIKQWIEKGLEYGSIQELRQHLSLFEYLSKK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaacaagaaatactaaaaaatatatttggacatgataactttagatctttc
caagaagaagtagttgattcaattctttcaaaacaagatgtattaactattcttcctact
ggtggtggaaagtcactttgttatcagttaccaacacttcttatggatgggattacagta
gtaatctctccacttatagcacttatgcaagaccaagtaaaagctcttaatgatttagat
atagaagcttcaatgatatcttcttctcaaacacctgatgaaaatggttttactatgcaa
aaacttttagcaggacagctgaagtttgtatatgttgcacctgagagatttacatctaat
gagtttgttagtgtattacaaagagtgaatataaactattttgtaatagatgaagctcac
tgtgtatctggatggggacatgagtttagagctgagtatagaaatcttaatagacttaag
cagtttttccctgatacttgtattgctgcatttactgcaactgcaactaaaaaagttgaa
gcagatatagctaataatttaaatctagtaaatgcaaaacactttagagctaagactcaa
agggataatcttgatatcaaagttgaaccaagaattgcaaatggaaagtcacagatatta
aacttcctaaaatcacataggggactatgtggaatcatatatacctttacaagaaaagaa
gcagaatcaactgcacaatttttagtagataatggatataaatcaaaagcatatcatgcg
ggattaagtgctgaacgtaaagatgaagtatttaatgattttgtatatgaaaatgtagat
attgtagttgcaactattgcatttggtatggggatagataaatcaaatattagatttgta
atacatacatctttacctaaaacattagaaaactactatcaagaaataggacgagctgga
cgtgatggagctatgtcttatgtatatttactttactcaaaaggtgatgaggtaaaaaga
aagatacaaatagaagactcaatagatgattcatataaacaaactggacttgacaagtta
gagtttatgtatagatattgtgtttcaaacaattgtagacataaaataattgcttcatat
tttgaagatgagatagatgaatgtaatacattatgtgataactgcacgaaaggtgaaata
gctcaagtagatgtaagtgttgaggctcaaaagttcttatctgctgtgtatagaagtgaa
cagagatttggaacaaatcacattatagatattcttcgaggttcaaagaatcaaaaacta
ttagagtttggacatgagcaactaaaggtatatggattaggaaaagataagagtaaaaat
gaatgggtagcaatagctgataaactgatagatatgcaagcagtaaatttaggtgagttt
agagtacttaaactaaatgctttaggtatggatatattaaaagggaatcaaaaactttta
atggatgaagataaactaggaattgctataaaacaagaagaatcacaagaagttttatct
tttgatgaagaattatatgagaagtttagaagcttacgtagacaaatggctagtgaacat
gaagtacctgcttatgtaatttttggagataagagtctaaaagagtttagctcgaaactt
ccaactacaaaagaagaaatgttagaagtaaatggagtgggtctaaaaaagtttgaaaaa
tatggggaagagtttttaaacctttgtaaagatataaaagaagagttcaaagaaaagatt
gagacaagagctcctttaaagaaactaacaaaaacatatacagatacatatgagttatta
caagaaggtaatagtctagaagatatagcacaaaaaagagatttaggtcttacatctgtt
ttatctcatgtaaacttactaaatgaacatgaaaaaatatcaaaagagaaaaaagaagag
ttattaaaacctttagaagtttcagatgaaataaaacaatggatagaaaaaggtttagag
tatggttctattcaagagttaagacaacacttgtctctgtttgagtatttatctaaaaaa
tag
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