Poseidonibacter lekithochrous: ALEK_3351
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Entry
ALEK_3351 CDS
T06860
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
alk
Poseidonibacter lekithochrous
Pathway
alk03410
Base excision repair
alk03430
Mismatch repair
alk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ALEK_3351 (recJ)
03430 Mismatch repair
ALEK_3351 (recJ)
03440 Homologous recombination
ALEK_3351 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alk03400
]
ALEK_3351 (recJ)
DNA repair and recombination proteins [BR:
alk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ALEK_3351 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ALEK_3351 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ALEK_3351 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
HypF_C_2
Motif
Other DBs
NCBI-ProteinID:
QKJ24555
LinkDB
All DBs
Position
3483307..3484875
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AA seq
522 aa
AA seq
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MSKITKNRLFELLSARHTDNPYSRLADIPSPDNFKDIQKACTRIKEAVLKNEQITIVGDY
DVDGVVSTTIMLDFFTKAGIKVKHIIPNRFKHGYGLSPKIVDMIESGLVITVDNGISAVE
ASLKLQEKGIDLIITDHHTVGDKLPTAVAIVNPKQEDCNFEFKDICGAQVAWYLCAAIKK
ELNLNINMSDFLDLLSVAIIADIMPMTALNYTMVKQGLKKIKSSKREAFKKLNEVMSKEA
FVSDDVGFFIAPKINSAGRMDDASVALSFLLSKNTYQANESLQLLEELNNYRKTLQEEIS
QKATAKSSKEENAVVVWGEEWHEGVIGIVASKLSHAFKRPAFIFSVNNGIAKGSARANAN
INLHTIITKASHLLLGFGGHKNAAGLSMKEENLEEFKKIINEELEVSKNDLHIDPITLGE
LDVGSVDLDFLSIIEQFEPYGLGNHKPIFKITNTTLVKCDLIGKDKNHLKLTLNSDGVIF
EALKFNDSNNKLPQNFDLIISVNKNEFRGEVSPQFLIQDILL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagataacaaaaaatagacttttcgaactactttcagcaagacatacggataat
ccttattctcgtcttgctgatatcccatctcctgataatttcaaagatatacaaaaagcc
tgtactagaattaaagaagctgttctaaaaaatgaacaaatcactattgtaggtgattat
gatgttgatggtgttgtttcaactactatcatgttagatttctttacaaaagctggtatc
aaagtaaaacacattattccaaataggtttaaacatggttatggactatctcctaaaatt
gtagatatgattgaatcaggtttagttattacagttgataatggtatttctgctgttgag
gcctctttaaagcttcaagagaaaggtattgacttaattattacagatcatcatacagtt
ggagataaacttcctacagctgtagctattgttaatcctaaacaagaagattgtaacttt
gaattcaaagatatttgtggagctcaagtagcttggtatttatgtgcagcaatcaaaaaa
gagttaaatcttaatattaacatgagtgacttcttagacctactttctgtagctattatt
gcagatattatgcctatgacagcacttaattatactatggtaaaacaaggtctaaaaaag
ataaaatcctcaaaaagagaagcttttaaaaaactaaatgaagttatgtcaaaagaagct
tttgtttcagatgatgttggtttttttattgctcctaaaataaatagtgcaggaagaatg
gatgatgcttcagttgcattatcttttcttttatcaaaaaacacataccaagcaaatgaa
tctttacaattattagaagagttaaataattacaggaaaactttacaagaagagatttca
caaaaagcaacagcaaagtcttcaaaagaagaaaatgcagttgtagtttggggtgaggaa
tggcatgagggtgttattggaatagttgcatctaaactatctcatgcatttaaaagacct
gcttttatcttctctgtaaataatggaatagcaaaaggtagtgcaagagctaatgcaaat
attaatcttcatactataatcacaaaagcgagtcatttattattaggttttggtggccat
aaaaatgcagctggattatctatgaaagaagaaaacctagaagagttcaaaaagattata
aatgaagaattagaagtatcaaaaaatgatttacatatagatcctattacattaggtgaa
ttagatgtgggatctgttgatttagacttcttatctattattgaacaatttgagccttat
ggtttaggtaaccataaaccaatttttaaaatcacgaatactactttagtaaaatgtgat
ttaattggaaaagataaaaatcatttgaagttaacacttaatagtgatggtgtaattttt
gaggcattaaaatttaatgattcaaacaataaactaccacaaaattttgatttgattatt
tcagtaaataaaaatgagtttagaggagaagtttcccctcaatttttaattcaagatatt
ttattataa
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