Alkalibacter rhizosphaerae: J0B03_00525
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Entry
J0B03_00525 CDS
T07100
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
alka
Alkalibacter rhizosphaerae
Pathway
alka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0B03_00525 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alka03019
]
J0B03_00525 (rny)
Messenger RNA biogenesis [BR:
alka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J0B03_00525 (rny)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
Propep_M14
KH_2
Motif
Other DBs
NCBI-ProteinID:
QSX09616
UniProt:
A0A974XPG9
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Position
107878..109425
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AA seq
515 aa
AA seq
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MEALGNYIILVIVGFTLIAFVAGYFVRKNIAEGKINSAEETAKRIVEDALKDADSQAKEM
LFNAKEEAHNTRMEVEKENRERRNEIQRLEKRLIQREENIDKRSEQIQSKEDSLNNKMNQ
LNNKEAKLDEMIENEMKELERISGLTFEEAKQILLGDVEKKIRRESAMLIKQIEGNAKDE
ADKKAKEILSYAIQKVAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGIDLI
IDDTPEAVILSGFDPIRREIARVALEKLIIDGRIHPARIEEMVEKAKKEIDQQIKEDGEQ
ASFDTGIHGLHPEIIKLLGRLRFRTSYGQNVLKHSIEVAHLASIMAHELGVNAKVAKRAG
LLHDIGKAVDHEVEGPHIEIGVDILRRYKESSQVIHAVEAHHGDVEATSVEAVLVQAADA
ISAARPGARRETLVSYIKRLEKLEEIANSFDGIEKTFAIQAGREVRIMVKPDKIDDVEMI
HVAKEIAAKIQSEMDYPGQIKVNVIRETRTIEYAK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
attgaggcattaggaaactacatcattcttgttattgttggtttcacattgatcgctttt
gttgcaggatattttgtacgaaagaacatcgctgaaggcaagataaacagtgctgaagag
actgcaaaaagaattgtggaagatgcattgaaagatgcagattcacaagcaaaagaaatg
cttttcaatgcaaaagaggaagcacacaataccagaatggaagtagaaaaagaaaatcga
gaaagacgcaacgagatccaacggctggagaaaagattgatccagcgggaggaaaacatc
gataaaagaagcgaacagatccaaagcaaggaagacagcctaaacaacaaaatgaaccaa
ctaaacaacaaggaagccaagttggatgaaatgatcgaaaatgaaatgaaggaactggag
cgaatctccggtctgacatttgaagaagccaagcagatcttgcttggtgatgtggagaaa
aaaattcgaagagagtctgccatgttgatcaaacagatcgaaggcaatgcaaaagacgaa
gcggacaaaaaagcaaaagaaatcctttcatacgccatacaaaaggtggccgcagatcac
gtggcagaaaccacagtatctgttgtcaacttgcctaatgacgaaatgaaaggccgcatc
atcggtcgggaaggtcgaaacatacgaacactggaaacgttgaccggtatcgacttgatc
attgacgacacgccggaagcagtcatcttgtcgggattcgatcccatacgacgagaaatt
gcacgagtggctttggaaaaacttatcattgatggccggatccatccagctagaatcgaa
gaaatggtggaaaaagccaaaaaggaaatcgatcagcaaatcaaggaagacggagaacaa
gccagcttcgatactgggatccacggattgcatccggagatcatcaaattgctgggacga
ttgcgttttagaaccagttacggtcaaaacgtgctgaagcattccatcgaagtcgctcat
cttgcgtccatcatggcacacgaactgggtgtcaatgccaaagtagcgaaaagagccgga
ttgcttcacgatatcggaaaagccgtagatcacgaagtggaaggtcctcacatcgaaatc
ggtgtggacattttgagaagatataaagaatccagccaagtgatccatgcagtagaagca
catcacggtgacgtggaagcaacatccgttgaagcagtattggtccaggcagcagatgcc
atatcggcagcgagaccgggagcaagaagagaaacattggtatcgtacataaaacgactg
gagaaattggaggaaattgcaaactcattcgatggtatagaaaaaacatttgcaatccaa
gctggccgagaagtacgaatcatggtaaaaccggataagatcgacgacgtggaaatgatc
catgtagcaaaggagatcgcagctaagatccagagcgaaatggattatccaggacaaatc
aaagtcaatgtgatccgagaaacaagaactatagagtatgcaaaataa
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