Alkalibacter rhizosphaerae: J0B03_01000
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Entry
J0B03_01000 CDS
T07100
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
alka
Alkalibacter rhizosphaerae
Pathway
alka03030
DNA replication
alka03430
Mismatch repair
alka03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J0B03_01000
03430 Mismatch repair
J0B03_01000
03440 Homologous recombination
J0B03_01000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alka03032
]
J0B03_01000
03400 DNA repair and recombination proteins [BR:
alka03400
]
J0B03_01000
Enzymes [BR:
alka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J0B03_01000
DNA replication proteins [BR:
alka03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J0B03_01000
DNA repair and recombination proteins [BR:
alka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J0B03_01000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
RNase_H_2
tRNA_anti-codon
Rv2179c-like
DEDDh_C
DNA_pol3_a_NI
HHH_3
Zn_ribbon_8
Cin1_N
Motif
Other DBs
NCBI-ProteinID:
QSX08699
UniProt:
A0A974XF38
LinkDB
All DBs
Position
complement(209024..213229)
Genome browser
AA seq
1401 aa
AA seq
DB search
MTREMKIMMNSFKEVIMAENIHIEKVEVHTEKELWTLYIKPRKDLDLDRLHANLSQALRQ
QVALELVCMDKQIFEWDEERRDAVKQWIRQTHASVLLTKNGWKEEGCRVSIPLISSSDLS
LFEKERIGSRLSTWFETTYGKKMDFDFFALEDMEEVSKEIEDAKLAAFTAPTVPPKAEKG
KNRPNALLLGRVIKGEPTPVASLEAETDVVILGKIFSITSKAIRNNLTIVSFHLTDHTSS
VTCKLFLNEEKTKKVLSGIEEDGWVKVKGKIQFDTFAKENILAVQSLETHFVQPRVDDME
KKRVELHAHTQYSAMDSVAKVANLVKKAKEFGHTSVAITDHGVLQAYPEAMELAKDLGIK
VIYGMEGYLVHDDNLPKWGDRDEALDGTFVVFDIETTGLSAKNSEIIEIGAAKINNNQII
ETYQSFVRPEGKVPVRITEITGISDNMVRNARGIKEVMIEFLDFVGGATLVAHNARFDMS
FIEAYCRKLDMQQEFSVIDTLALARNLLTDLSRFNLKTLSRYFKVDLTNHHRASDDAIAT
AKVFMHLVARSREKGAQTTSELNELYDSETAIKKMDTHHILILVKNQTGLKNLYKLVSLA
HLRYFYRRPRIPKSLLNRYREGLILGTACESGELFTAMLNDRSKEDLDNIVSFYDFLEVQ
PLGNNSFLLDKGIVSNEEELKGINKRIVALGEEHNKPVVATGDVHFVEPEDECYRKVLQC
GQKYDDFNKQPPLYYRTTEEMLEEFSYLGVDKAMEIVVDSTNRIADSVEEILPIPDGTFP
PKIEGSDEEIRNMVLEAAKEKYGDPLPELVEKRVWRELDSIINNGYSVLYLVAHKLVKKS
MDDGYLVGSRGSVGSSLAATFSGITEVNPLPPHYVCPKCKNNEFFDSATVGSGPDLPEKN
CPKCGTPYEKDGFDIPFEVFLGFEGDKEPDIDLNFSGEYQNVAHKYTEELFGTGNVFRAG
TISTLAEKTAFGYVKNYLEENGLLVTNAEIDRLVKGCTGIKKTTGQHPGGIMVVPSDKDI
YDFCPIQKPADDVNTETVTTHFDYHSISGRLLKLDILGHDDPTMIRMLEDLTGVDATSIP
LDDVETMSLFTSTKALDLKDDNIGSTVGTYGVPEFGTGFVREMLLDIKPTAFADLIRISG
FSHGTDVWLNNAQDLIVNKTATINELISTRDDIMVYLIHKGLPSNRAFSIMEKVRKGKGL
NDDDVALMKEKEVPQWYIDSCNKIKYMFPKAHAVAYVTMAYRIAYFKVHHPLAYYATYFT
VRADDFDAHLAVQGKDAVRKRIKEIKDNGNNATAKEKTTLTVLELILEMLCRGYDFLPVN
LYESHYGKFQIQDGKLLPPFNALEGIGLKAAQSIYDSQNNGEFISIEDLQSRTRISKTNI
EVLIKHGTINNLPLSNQISLF
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgacacgagaaatgaaaatcatgatgaactcttttaaagaggtcattatggctgagaat
attcacatagaaaaagtggaagtccacacggaaaaggaactttggacattgtatatcaag
ccaaggaaggatcttgacctggaccgtttgcatgcaaatttgagccaggctctccgccag
caagtagcactggaattggtttgtatggacaagcagatctttgaatgggacgaagaacga
cgggatgccgtcaaacagtggatccgccagacccacgccagtgttcttttgacgaagaac
ggctggaaggaagaagggtgccgggtctccatacctctcatttcttcctcggacctgtct
ctctttgagaaggaacggatcggttcgcgtctttccacatggtttgaaacaacctacggc
aagaagatggattttgatttttttgccttggaagacatggaggaagtgtcaaaggagatc
gaagatgcaaaactggcagcttttacagctcccacggttccgcccaaggcagaaaaaggc
aagaacaggccaaatgcccttttgctggggcgggtcatcaaaggagaacctacaccggtc
gcctctttggaagcagaaacagatgtggtgatcctggggaagatcttttccataaccagc
aaagccattcggaacaatttgaccattgtgtcctttcatttgacggaccatacatcttct
gtcacatgcaagttgtttctcaacgaagagaaaacgaaaaaagttttgtccggaatcgaa
gaggatggatgggtcaaagtcaaaggcaaaatacagttcgacaccttcgccaaagaaaat
attttggccgtgcaatctctggaaactcatttcgtccagccccgagtggacgatatggag
aaaaaaagagtggaactccatgcccatacccaatacagtgccatggacagtgtggcgaaa
gtggcgaatcttgtgaaaaaagcaaaagaattcggacatacttccgttgccattacagac
catggggttttgcaagcctatccggaagccatggagctggcgaaggatctgggcatcaag
gtgatctacggcatggaaggatatctcgttcatgacgacaaccttccaaaatggggggat
cgggacgaggcacttgacggaacattcgtggtattcgacatagagacaactgggttatcg
gcaaaaaacagcgagatcatcgagatcggcgctgcaaagatcaacaacaaccagatcatc
gaaacgtaccaatcctttgtgcgcccggaagggaaagtgccggtacggatcacggagatc
acaggaatttccgacaatatggtacgaaacgcccgaggcatcaaggaagtcatgatagaa
tttttggatttcgttgggggggccaccttggtggcccacaacgcacgattcgacatgtct
ttcatagaagcctattgcagaaaactggacatgcagcaagaattctccgtcatcgataca
ctggccctggcgcgtaaccttctgacggatctgagtcgtttcaatctgaagacacttagc
cgatactttaaagtggacctgaccaatcaccatcgggccagcgatgatgccattgccact
gcaaaagtatttatgcatctggttgcccgaagccgggaaaaaggcgcccaaaccacatcc
gagctgaatgaattgtacgattcggaaacggccatcaaaaaaatggacactcatcatatt
ttgatcctggtgaaaaaccagaccgggttgaagaacctgtacaaactggtatccctggct
catctgcgatatttctacaggcgcccaaggatccccaaaagcctgctcaaccggtatcgg
gaaggattgatcctggggaccgcttgtgagagtggtgagctgtttaccgccatgttaaac
gatcgatccaaggaagatctggacaatatcgtttccttctatgattttttggaagtacaa
ccattgggaaacaacagctttttattggacaaagggatcgtatccaacgaagaagagttg
aaagggatcaacaagcggatcgtggccctgggagaagaacacaacaagccggtggtggca
actggagatgttcattttgtggagccggaagacgagtgttaccgaaaagtcctgcaatgc
ggtcaaaaatacgatgatttcaacaaacagccgccgttgtattatcgaacaacggaagaa
atgttggaagaattttcttatctgggcgtggacaaagccatggagatcgttgtggacagc
accaaccgcatcgccgattccgtagaagagatccttccgatcccagacggtacatttcct
ccaaagatcgaaggttctgatgaagagatcagaaacatggtgttggaagcggccaaagaa
aagtatggagaccctctacccgagttggtggagaaacgagtatggcgggaattggactcg
atcatcaataacggatactccgtattgtacctggttgcccacaaactggtcaaaaaatcc
atggacgatggataccttgtaggttccagggggtctgtgggcagttctctggcggccacc
ttttccgggatcaccgaggtcaacccgctgccaccccattacgtttgtcccaaatgcaaa
aacaacgagtttttcgacagtgcgacggttgggtcgggaccggacctgccggaaaaaaac
tgtcccaaatgcggtacaccttatgagaaagacggcttcgacattccttttgaagtattt
ctggggtttgaaggggacaaagaaccggatattgacttgaacttctccggagagtatcag
aatgtggcccataaatacacggaagaattgtttgggacgggaaatgtgtttcgtgcaggg
accatttcgacccttgcagaaaaaacagctttcggctacgtgaaaaactatctggaagaa
aacggacttctggtgaccaatgcagagatcgatcgattggtgaaaggttgtaccggcatc
aaaaaaacgacaggtcagcacccgggagggatcatggtcgttccatcggacaaggacatt
tacgatttttgtcccatccagaaaccggcggacgacgtgaacaccgagaccgtcaccacc
catttcgactatcattccatcagcggcagactactgaagctggatattttaggacatgac
gatcccaccatgatccgcatgctggaagacttgaccggagtggatgctacttccattcct
ttggatgatgtggaaaccatgagcttgtttacgtcgacaaaagccttggacctgaaggat
gacaacattggcagcaccgttgggacgtacggtgtcccggaatttggaacgggttttgta
cgggaaatgcttctggacatcaagccgacagcctttgcggatctgatccgaatatccgga
ttttcccacggaacggatgtctggttgaacaacgcacaggatctgatcgtcaacaagacc
gccaccatcaacgaactcatcagtacccgggacgacatcatggtttatctgatccacaag
ggattgcccagcaatcgagcgttcagcatcatggaaaaggttcgaaaagggaagggactc
aacgacgacgatgtggcactaatgaaggaaaaggaagtccctcaatggtacatcgacagc
tgcaacaagatcaaatacatgttccccaaggcccatgccgtggcatatgtcaccatggcc
taccggatcgcttattttaaggtccatcaccctttggcatactatgccacctattttacc
gtccgggcggacgattttgatgcacatctggcggttcaaggaaaagacgccgtgcgaaag
cggatcaaggagatcaaagacaacggaaacaatgcgacagccaaggaaaaaaccaccctt
acagtcttggagttgatcttggaaatgctttgcagggggtatgatttcttgccggtgaac
ttatacgaatcccattacggaaagtttcaaatacaggacgggaaattgctgccacccttc
aatgcgttggaaggcatcggcttgaaggcggcacaaagcatttacgattcccaaaataat
ggggaatttatatccatcgaagatcttcaaagcagaacgagaatcagcaagacaaatatt
gaagtacttatcaaacacggaaccatcaacaacttgcccttgtccaatcaaatatcgttg
ttttaa
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