Alkalibacter rhizosphaerae: J0B03_05285
Help
Entry
J0B03_05285 CDS
T07100
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alka
Alkalibacter rhizosphaerae
Pathway
alka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0B03_05285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alka03019
]
J0B03_05285
Enzymes [BR:
alka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J0B03_05285
Messenger RNA biogenesis [BR:
alka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J0B03_05285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Utp25_C
ElxI1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QSX09478
UniProt:
A0A974XGP2
LinkDB
All DBs
Position
complement(1071724..1073034)
Genome browser
AA seq
436 aa
AA seq
DB search
MLFEDLKLMEPIKKAIKTKGYTKPTAIQSKAIPPLLMGKDLLGCAQTGTGKTAAFAIPIL
QGIALQQKASPGRRQIQALVVAPTRELAIQISDSFKEYGKYLNLKTLVIYGGVSQHPQTK
DLTKGIDILVATPGRLLDLITQRYVSLKSVKYFVLDEADMMLDMGMLLDVRKIITHLPQE
KQTMFFSATMPAEIEKLANSILKDPAKVVVTPVSSTVEIINQELYYVDRGNKAKLLTHLL
KNKAIISALVFSRTKHGANKIVKYLEKAGFNAEAIHGNKSQTARQLALKNFKERKTRILV
ATDIAARGIDIEELSHVINFDLPEVPETYVHRIGRTGRASHGGIAISFCSHDEKSMLKGI
QRLISKSIEEVSDHPYPLVDTNVEPVAKPIRRNTSTKPGTQDQTRNRRRNNEMKKKAGRT
EKSRSSSKGYKSRSEE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
ttgttatttgaagatttaaagttaatggaaccgataaagaaagccataaaaacgaaaggg
tatacaaagccgacagcgatccaatcgaaagccataccgccccttctaatgggcaaggat
ctattagggtgtgcccaaacaggcacagggaaaacggcggcttttgctatccccatcttg
caaggcattgcattgcagcaaaaagcatccccgggccgcaggcagatccaggccttggtc
gtagcaccaaccagagaattggccatacagatatccgatagttttaaagagtacggcaag
tacttgaatctgaagacgctggtgatctatggtggtgtatcgcaacaccctcaaacaaaa
gacctgactaagggaatcgacatactggtggccacacctggaagactgctggatttgatc
acccaaagatatgttagtttaaagagtgtaaaatatttcgtgctcgacgaggcggacatg
atgctggatatgggtatgctgttggatgtgcgaaaaatcatcacacacctgcctcaggaa
aaacagaccatgtttttttccgccaccatgcctgctgagatcgagaagctggcaaattcc
atattgaaggatcccgccaaggtagtggtcacaccggtatcctcaacggtggagattata
aatcaggaattatactatgtggatcgtggtaataaagcaaaactgcttactcatttattg
aaaaacaaagccatcatatcggccctggtgttttcaagaacgaaacatggagccaataag
atcgtcaagtatttggaaaaagccgggttcaatgcggaagcgatccacgggaacaagtcc
caaacggcaaggcagctggccttgaagaattttaaggaaagaaagaccagaatacttgtg
gctacagatattgcagccagaggcatcgatatcgaagagctgtctcatgtcatcaatttt
gatctgccggaggttccggaaacctatgtacatcgtatcggtcgtactggcagggccagt
cacgggggcatcgccatttccttttgcagccatgatgagaaatcgatgttaaaaggcatt
cagcgtttgatctccaaatccatcgaagaagtaagtgaccatccatatccattggtagac
acaaatgttgaacctgttgctaaaccgattcgacggaatacttcgacaaaacccgggact
caggatcaaaccagaaacaggagaagaaacaacgaaatgaagaagaaagctggtaggacg
gaaaaaagtcgttccagttctaaaggatacaaatcgagaagcgaagaataa
DBGET
integrated database retrieval system
