Alkalibacterium sp. f15: ACO1PF_06625
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Entry
ACO1PF_06625 CDS
T11423
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alkf Alkalibacterium sp. f15
Pathway
alkf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alkf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACO1PF_06625 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alkf03021
]
ACO1PF_06625 (rpoC)
03400 DNA repair and recombination proteins [BR:
alkf03400
]
ACO1PF_06625 (rpoC)
Enzymes [BR:
alkf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACO1PF_06625 (rpoC)
Transcription machinery [BR:
alkf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACO1PF_06625 (rpoC)
DNA repair and recombination proteins [BR:
alkf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACO1PF_06625 (rpoC)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XRI55400
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Position
1343583..1347218
Genome browser
AA seq
1211 aa
AA seq
DB search
MIDVNKFESIQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPSKDYEC
ACGKYKRVHYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
SPRALEEIIYFASYVVIDPGDTPLERKQLMTEREYRERRAQYGKSFQADIGAEAIKSLLN
NVDLVEEAKELKELLQTASGQKRTRAIRRLDILEAFRNSGNDPSWMVMDVVPIIPPEIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPHIIVQNEKRMLQEAVDALVDNGR
RGRAVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKMYQCGLPKE
MAIELFKPFVMRELVVREIANNIKNAKRKVERMDEEVWAVLQDVIREHPVLLNRAPTLHR
LGIQAFEPILVEGKAIRLHPLVCEAYNADFDGDQMAVHVPLSDEAQAEARILMLGAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEVDGKIGEGMVFSSTAEAVQAYQTGYVHLHTRVAVH
ASSLTGKPFTDYQKDQFLITTVGKLIFNEIMPKEFAYLNEPTMENLEEKTPDKYFVPYGT
DIRKHITEMPLVVPFKKKNLSNIIAEVFKQFQVTETSKMLDKMKNLGYKYSTKSGITVGI
ADISHLEEKEEILEKAHKQVERINASHRRGLITEEERYTSIIEVWTKTKDTIQAHLMTTL
DNHNNIFMMSDSGARGNISNFTQLAGMRGLMAAPSGRIMELPITSNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRNEDCGTKRGLVVEAIRDGNEIIEPLE
ERISGRHARKTVLHPKTGEVMVSENDLITEGLSRAIVEAGIEQVTIRSAFTCNAKHGVCK
KCYGRNLATGRTVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIF
EARHPKGQAVITEVTGEIISIDEKQGERTKEITVKGATDTRTYTVPSNARMRIKEGSFIE
RGDAFNEGSIDPKQLLAVSDVLKLQNYLLKEVQYAYRSQGVEIGDKHIEVMVRQMLQKVR
VLDPGNTNILPGSLIDIDDFKQANKETLLSGGLPATARSVLLGITKASLETNSFLSAASF
QETTRILTDAAIRGKNDPLIGLKENVIIGKSIPAGTGMKVYNDMKPKEVGVVSENVYSIN
DEKTPTKNTEK
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaatttgaaagtatccagattggattggcttcaccagacaagatc
cgtagttggtcttatggagaagttaaaaaaccagaaacaattaattaccgaacattgaaa
ccagaaagagatggcttattctgtgaaagaatatttggaccatcaaaagactacgaatgt
gcgtgcggtaagtacaaacgtgttcattataaaggcattgtttgtgaccgttgtggagtc
gaagtaacaaaatctaaagtccgaagagaacgtatgggacatatagaactagcggcacca
gtcacacatatctggtattttaaagggattccaagtcgtatgggtctgattttagacatg
tcaccacgcgcgctggaagaaatcatttattttgcttcttacgttgtcatcgatccaggt
gatacaccactcgagagaaaacaattaatgacagaaagagaataccgtgagcgtcgtgca
caatatggaaaatctttccaagctgatattggtgccgaagccattaagtcattattaaac
aatgtagatttagtagaagaagccaaagagctgaaagaattgcttcaaacggcttccggt
caaaaacgcacacgtgcgattcgtcgtttagacattctggaagcatttagaaattcaggg
aacgatccgtcatggatggttatggacgttgtaccaatcatcccgcctgaaatcagaccg
atggttcaactcgaaggtggacgcttcgcaacaagtgacttgaatgatctttatcgtcga
gtcattaaccgtaacaaccgtttgaaacgtttattagatttaaatgcaccgcatatcatt
gttcaaaacgaaaaacgtatgctgcaggaagcggtcgacgcattagttgataatggtcgt
cgtgggcgtgcagtaactggaccaggtaaccgtccacttaaatcgttgtctcatatgttg
aaagggaaacaaggacgtttccgtcaaaacttattgggtaaacgtgtagactattctggc
cgatcagttatcgtagttggaccaaccttgaaaatgtatcagtgtggtctgccgaaagaa
atggcaatagaactgttcaaaccttttgttatgcgtgagttagttgtaagagaaattgca
aataacattaaaaatgctaagcgaaaagtggaacgcatggatgaagaagtctgggcagtc
ttacaggacgttattcgtgaacatcccgttcttctaaaccgcgcacctacattacaccgt
ttgggtattcaggcgtttgaaccgattcttgtcgaaggtaaagcaatccgtcttcacccg
ctagtctgtgaagcctataatgccgatttcgatggagaccaaatggctgttcacgttcct
ttaagtgatgaagcgcaggcagaagcacgtattctgatgcttggtgctcaaaacatcttg
aaccctaaagatggtaaacccgttgtaacgccttcacaggacatggttttaggaaactat
tacctgactatggaagtggacggaaaaatcggagaaggaatggtattctcgagtactgct
gaagctgttcaagcttatcaaactggctatgttcacttgcatacacgcgttgcggtacat
gcgtcatcattaacgggtaaaccattcacagattaccaaaaagaccaattcttgattaca
acagtcgggaaattgattttcaacgaaattatgcctaaagaattcgcatatttaaatgaa
ccaacgatggaaaaccttgaggaaaaaacacctgataaatattttgtcccttatggtaca
gatatcagaaaacatatcaccgagatgccactagttgttccatttaaaaagaaaaactta
agtaatatcattgctgaggtctttaaacagttccaagtaactgaaacatctaaaatgctt
gataagatgaaaaacttaggctataaatattcgacgaaatccggtatcacagttgggatc
gccgacatttctcacttggaagaaaaagaagaaatcttagagaaggcgcataagcaagta
gagcgtatcaatgcgtcacatcgtcgtggtttaattactgaagaagaacgttatacttct
atcattgaagtatggacgaaaacaaaagatacgattcaagcgcacttaatgaccacttta
gataatcacaacaacatcttcatgatgagtgattccggagcgcgtggtaatatctctaac
tttacacagttagcaggaatgcgtggattgatggctgctccaagtggacgaatcatggaa
ctgccgatcacatcgaacttccgagaaggcttatccgttttggaaatgtttatctcaact
cacggagctcgtaaaggtatgactgatacagcgcttaaaacagctgactcaggttatctt
acacgtcgtttggttgacgtagcacaagacgttattattcgtaatgaagattgtgggacg
aaacgtggtttagttgttgaagcgattcgtgacggcaatgaaatcattgagccgctagaa
gaacgtatcagcggaagacatgcacgtaaaacagtgttacatcctaaaacgggtgaagtt
atggtttctgaaaacgacttgatcactgaaggtttgtctagagcgatcgttgaagcagga
attgaacaagtaaccattcgttcagcctttacatgtaacgctaaacatggtgtatgtaaa
aaatgttatggtcgtaacttagcaacgggacgcacagtagaagttggagaagcagtcgga
accatcgctgcccagtctatcggcgaaccaggcacgcagttaactatgcgtacgttccat
accgggggagttgccggtgatgatatcactcaaggtcttcctcgtgttcaagagatattt
gaagcaagacatcctaaagggcaagctgtcattacggaagtaacgggcgagattatctcg
atcgatgaaaaacagggtgagagaacgaaagaaatcacagttaaaggtgcaacagataca
cgaacgtataccgtgccaagtaatgcacgtatgcgtatcaaagaaggcagcttcattgaa
cgtggcgatgcctttaacgaaggttcgatcgatccaaaacaattgctcgcagttagtgat
gttcttaaattacaaaactacttgcttaaagaagttcaatacgcttaccgtagtcaaggg
gtagaaattggcgataaacatatcgaagtaatggttcgccaaatgctgcaaaaagttcgt
gttctcgatccggggaatacaaacatcttgccaggtagcctaatcgatatagacgacttt
aaacaagcaaacaaagaaacgttattgtcaggcggacttcctgccacagcacgttcagta
ttattaggtattactaaagcatcacttgaaacaaacagcttcttatctgccgcatccttc
caggaaacgacacgtatcctgacagatgctgcaatcagagggaaaaatgatccactcatc
ggcttgaaagaaaatgttattataggtaaatctattccagctggaacaggtatgaaagtc
tataatgatatgaagcctaaagaagtgggcgtagtcagcgaaaacgtttatagtatcaat
gacgaaaaaacgccgacaaaaaacacagaaaaataa
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