Alkalibacterium sp. f15: ACO1PF_08505
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Entry
ACO1PF_08505 CDS
T11423
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
alkf Alkalibacterium sp. f15
Pathway
alkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACO1PF_08505 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkf03019
]
ACO1PF_08505 (rnr)
03016 Transfer RNA biogenesis [BR:
alkf03016
]
ACO1PF_08505 (rnr)
Enzymes [BR:
alkf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACO1PF_08505 (rnr)
Messenger RNA biogenesis [BR:
alkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACO1PF_08505 (rnr)
Transfer RNA biogenesis [BR:
alkf03016
]
Prokaryotic type
tRNA degradation factors
ACO1PF_08505 (rnr)
BRITE hierarchy
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Ortholog
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GFIT
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NCBI-ProteinID:
XRI55749
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Position
1741023..1743347
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AA seq
774 aa
AA seq
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MSKEKESNLKKDILEYMKEQDEKAMEVNEISEGLNLSGADDFRKVVKAIAELEREDKVVL
LQNGQFRLKAAAASMTGRFSGTDRGFGFVTIEEYEQDIFIPPNDTLSALNGDTVKVVVTQ
EAMAWKDKGPAGRIIEVIERGTEHIFGEFHAYNDEEVKEKNLYGYVKPKNQKMPDLMVQI
ETEGIRPVEGSIVQVEITDFAHNGEMNHLSGIVSKTLGHKDEPGIEILTVVHKYDIPSEF
PKEVLDEAESVPDMIDEEDIKGRTDLRDEMIITIDGADAKDLDDAIQVKRLDNGNYYLGV
HIADVSHYVTENSAMDVEALNRGTSVYLTDRVIPMIPQRLSNGICSLNPNVDRLTLSCEM
EIDKAGQIVDYTVSSSVINSKYRMTYKGVNGILDDDDQELKQEYSEILEMLEEMRTLHNI
LLEKREARGSIDFDTREAKIEVDPTGFPVDIILRETGVGERLIESFMLSANETVSEHFAK
QDLPILYRIHDKPDEGKMQRFIEFVSSFGIKVNGLKESITPKKLQDILDEVDGKPEAGVI
SMLLLRSMQQAKYDVVPIGHYGLAAEYYSHFTSPIRRYPDLILHRLIHYYEDEGTGQKAK
DRWNALLPEIAERSSITERRAVSAERETDEMKKAEYMSTKIGEKFEGVITSVTGFGLFVQ
LENSVEGLVHISNMKDDYYEFNERELLLVGQRSGNTFRIGKTIEIIVTKADKESYDIDFE
LVEDEEAKEKRIKDNIARRARNKDKGDKKKRFRKGKSKDDKDNKGRHKAKKPNK
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggaaaaagaaagcaatttaaaaaaagacatacttgaatacatgaaagaacaa
gatgaaaaagccatggaagttaacgaaatcagtgaaggtttgaacctttctggagcggat
gactttagaaaagtggttaaagctattgcagaattggaaagagaagataaggttgtcctt
ctacaaaatggacagttcagattgaaagcagccgcagcatccatgactggccggtttagt
ggcactgaccgtggattcggctttgtaacgatcgaagaatatgagcaggatatctttatt
ccgccaaacgataccttatcagccttgaatggagataccgttaaagttgtagtgactcaa
gaagccatggcatggaaagataaaggccccgcaggtagaatcatcgaagtcattgaacgc
ggtacagaacacatctttggtgaatttcatgcttataatgatgaagaagtaaaagagaaa
aacctctatggttacgtgaagcctaaaaatcagaaaatgcctgatttgatggtccaaatt
gaaactgaagggatccgtcctgtcgaaggaagtatcgttcaagttgaaataacagacttt
gcacacaatggtgaaatgaatcatttaagcggtattgtatctaaaacactcggacacaaa
gatgaaccgggtattgaaatcttgaccgtggtccataaatatgatattccaagtgaattt
ccgaaagaagtactagatgaagcagaatccgttccagatatgatagatgaagaagatatc
aaaggacgtaccgatttgcgcgacgaaatgattattaccatcgatggtgcagatgcgaag
gatttagacgatgcgatacaagtgaaacgcctggataatggcaattactatttaggagtc
catattgcggatgtcagccattacgtcacggaaaacagcgcaatggatgtcgaagccttg
aatcgcggaacgagtgtgtatttgaccgaccgtgtcattccgatgatacctcagcgctta
tccaatggtatctgttcgcttaatccgaacgtagaccgactaacgttaagttgtgaaatg
gaaatcgacaaagccggtcaaatagtggattataccgtttcatcaagtgtcattaattcc
aaataccgtatgacctataaaggggtcaacgggattttagatgatgatgatcaggaactt
aaacaggaatacagtgagatccttgagatgcttgaagaaatgcgaacactgcacaatata
ttattggaaaaacgtgaagcacgtggatcgatagactttgatacacgtgaagcgaaaatt
gaagttgatcctacaggtttccctgtggatatcatactcagagaaacaggtgtgggtgaa
cgactcattgaatcgttcatgctgtctgcaaacgaaacagtatctgaacatttcgctaaa
caagatttaccgatattgtatcgtatacatgataaacccgatgaaggaaaaatgcagcgc
ttcatagaatttgtgtcaagctttggcattaaagtcaacggtctaaaagaatcaattact
ccaaaaaaattgcaagatatattagatgaagtagacggtaagccggaagccggcgtcatc
agcatgctgttgcttcgttcgatgcaacaagcgaaatacgatgttgttccgattggacac
tatggcttggctgcagagtactattctcactttacgtcgccgatcagacgttaccctgac
ttgatcctgcatcgactcattcattattatgaagatgaaggaacaggccagaaagcgaaa
gaccgctggaacgctctcttaccagaaattgctgaacgcagttcgattacagaacgtcgc
gcagtaagtgccgaacgtgaaacggatgaaatgaaaaaagccgagtatatgtctactaaa
attggtgaaaaattcgaaggcgtaatcacgtcagttacaggctttggcttgttcgttcag
ttagaaaactctgttgaaggactcgttcacatttccaacatgaaggatgattattatgaa
tttaacgagcgcgagctcttgctcgtcggtcagcgatcaggtaatacctttagaatcgga
aaaacaattgaaatcatcgtaacaaaagccgataaagaatcttatgatatcgactttgaa
ttagtcgaagacgaagaagcaaaagaaaaacgcatcaaagataacatagcgagaagagca
cgcaacaaagacaaaggtgacaagaagaaacgttttagaaaagggaaatctaaagatgac
aaagataacaagggacgtcataaagcgaaaaaacccaataaataa
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