Alkalihalobacillus sp. AL-G: MOJ78_00425
Help
Entry
MOJ78_00425 CDS
T09526
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alkg
Alkalihalobacillus sp. AL-G
Pathway
alkg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MOJ78_00425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alkg03400
]
MOJ78_00425 (mfd)
Enzymes [BR:
alkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MOJ78_00425 (mfd)
DNA repair and recombination proteins [BR:
alkg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MOJ78_00425 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WLD93464
LinkDB
All DBs
Position
84866..88399
Genome browser
AA seq
1177 aa
AA seq
DB search
MQGLLHHFCDQDDFQSLVSGMKEGLKEQLVSGLSGSARTMMMACLYKTNQSPQLVVTHNL
FQAQKLYEDLVELVGEEEVSLYPVNDLTSAEIAIASPELKSQRLDVLNRLSKQAKGIIVT
PIAGLRRIIPPRSVWKDSQLGFEVGTDIDLDELKDKLVAIGYERSGMIASQGEFSIRGGI
LDIFPFTESQPVRIELFDTEVDSIRFFDVETQRSEKQMDNVSIGPAAEILLFEEQYRKGI
SEIEQGLARSLKKVKDDRVKEKLAEHIGYEVEQLRQKQTFQGIYKYISYYYDQPASLLDY
LPEKTVVIMDEISRIQDTSSQLEKEEAEWQTTLLNQGEMLSGVTLSHQYEMLLQHSKKNF
VYLSLFLRHVPHTNPQNIVNMTCKSMQNFHGQLNVLKAEIERWHKSKAAVVFLAANDDRA
KRLERVLADYNISAEIVEGKTRIISSKNQIMIGDLNGGFELPMQKLVVLTEEEVFTKKSQ
KPRRPQKMSNAERIKSYSELKVGDYVVHINHGIGKYLGIETLEINGVHKDYLHLKYAGDD
KLYVPVEQIDQVQKYVGSEASEPKVYKLGGSDWKKVKNKVKSSVQDIADDLIKLYAEREA
AKGFAFSRDGGLQQEFESIFPYQETEDQLRAIDEIKEDMEKERPMDRLLCGDVGYGKTEV
AIRAAFKAIHDGKQVALLVPTTILAQQHYETLQERFAEFPVTIKSLSRFRSRKEQTETLK
GLKQGTVDIVIGTHRLLSKDVKFKELGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYSGNMIREAIERELSRGGQVYFLYN
RVESISRMAEQISMLVPDARIAYAHGQMKENELEAVMIDFLEGNYDVLVSTTIIETGVDI
PNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYSYFMYQRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDKPKEVTVN
LELDIDVDAYIPSLYISDEKQKIDMYKRFKAINSLDDVMDLKDEMIDRFGDYPEQVANLF
SVSRIKMLAQKEKVLKVEKIKNHQIQILLSKEATLRIDGSKLFEIVNKIGRHVNLGMAGE
QIKVLINRRHLSDSKLLDTIETVMNQFPNAKKEPVQA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggattgcttcatcatttttgcgatcaagacgatttccaatctcttgtatccgga
atgaaagaaggattgaaggaacaactcgtatcaggcctgtccgggtctgccaggacaatg
atgatggcctgcctatacaaaacgaatcaatctcctcaactggtcgtgacccataacctt
tttcaagcacaaaagttatacgaagaccttgttgaactggtaggtgaggaagaggtttcg
ttatatcctgttaacgatttgacatctgctgagattgcgattgcaagccctgaattaaaa
tcacagcggcttgacgtactaaacaggttgagcaaacaagcgaaggggattatcgttaca
ccgatcgctggacttagacggatcattccaccacgctcggtttggaaagatagtcagctt
ggctttgaggtcggcacggatatcgaccttgatgaattgaaggataagttagtagcaatc
ggctatgagcgttcgggtatgatcgcttcgcagggagaattcagtattcggggtggaatt
ctagatatctttccatttacagagtcacagccggttcgtatagagctttttgatactgaa
gttgattcaattcggttttttgatgtcgaaacacagcgttctgagaagcaaatggataac
gtttcgataggacctgcagctgaaattttacttttcgaggaacaataccgaaagggcatt
tcagagattgaacaaggcttggctcgttcgttaaaaaaggttaaggatgatcgtgtaaaa
gaaaagttagctgagcacatcggttatgaggtggaacagcttcggcaaaaacaaacgttc
cagggaatttataaatacatttcttattattacgatcaacccgctagtttactagattat
ttaccggaaaaaaccgtcgtcatcatggatgaaatcagccggatccaggatacttcttct
cagttggaaaaagaagaggcggaatggcagacgacgctgttgaatcaaggcgagatgtta
tccggggttactttatcccatcagtatgagatgttattgcagcatagcaaaaagaacttt
gtttatttatccttatttctcagacatgtaccgcatacgaacccgcaaaatatcgttaat
atgacctgtaagtcgatgcagaattttcacggacagcttaacgtacttaaggctgagatt
gaacgctggcataaaagtaaggctgccgtcgtttttcttgctgcaaatgatgatcgggca
aaacggcttgagcgagtattggctgattataatattagtgccgaaattgtcgaagggaag
acccggatcatttcatcaaaaaatcaaatcatgattggagatttgaatgggggctttgag
cttccaatgcaaaagctcgtagtgttgaccgaggaggaagtcttcactaagaaatcccaa
aagcctcgacgacctcaaaaaatgtccaacgctgaacgaattaaaagctattctgagctt
aaggttggagattatgtcgttcatattaaccatggaatcggaaaataccttggcatagag
acgcttgaaatcaatggtgtccataaggattatcttcatttaaaatacgcaggggatgat
aagctttacgttcctgtagaacaaatcgaccaagtacaaaagtacgtaggatctgaagcc
agtgagcctaaagtatacaagcttgggggaagcgactggaaaaaggttaagaataaagtc
aagtcgtctgtgcaggatatcgctgatgacctgattaagctttatgcagagcgggaagct
gcgaaaggctttgctttttcaagggatggtggattgcagcaggaatttgaaagcattttt
ccatatcaagaaacagaggatcaattaagggctattgacgaaattaaagaggatatggaa
aaagagcgtcctatggatcggcttttatgcggtgatgttggttatggaaaaacggaggta
gcgattcgagctgcctttaaggcgattcacgatgggaagcaggttgctttgcttgttccg
actacgattcttgctcagcagcattacgagacgttacaggaacgttttgcagaatttcca
gtgacgatcaagtctctcagtcggttccggtcccgaaaagaacaaacggaaacgctaaag
gggttaaagcagggaaccgtcgatattgtcatcggtacacatcgtctactctcaaaagat
gtgaaattcaaagagctgggcctactcatcatcgatgaagaacagcggtttggtgtgaca
cataaagagaaaattaagcaaatgaagacgaacgtcgatgtacttacattgacagcaaca
ccgattcctcgtaccctccatatgtcgatgctcggtgtgagggatctttcagttatagag
actccgcccgaaaatcgttttcctgtacagacgtatgttgtcgaatacagtggcaatatg
attcgtgaggcaatcgagcgtgagctttcaagaggcggtcaggtgtactttttatacaat
cgagtcgaatcgatttcgcgaatggctgagcaaatttcgatgctcgttcctgacgcaaga
atcgcctacgcacatggacaaatgaaagaaaacgagcttgaagcggtgatgatcgacttt
ttagaaggaaattatgatgttcttgtcagtacgacaatcattgaaaccggggttgatatc
ccgaacgtaaacacactgattgtccatgatgccgataaaatgggcttatcccagttgtat
cagcttcgtggtcgtgtcggtcgctccaatagggttgcgtattcttactttatgtatcaa
cgtgacaaagttcttactgaggtcgcagaaaaacgattacaggcgatcaaggaattcacg
gaattaggatctggattcaaaattgcgatgcgggacttaactattcgtggggcaggtaac
cttcttggtgctcaacaacatggctttatcgattctgtcggctttgatttgtattcccag
atgcttaaagaggcaattgaggaacgaaaaggggataaaccgaaagaagtaacggtcaac
ctggaattggatatcgatgtagacgcctacattccttctctctatataagtgacgaaaaa
cagaagatcgacatgtataaacgatttaaagcaataaacagcctagatgatgtgatggac
cttaaagatgagatgattgatcggtttggcgattacccagagcaggttgcgaacttattc
tctgtttcacgtatcaaaatgcttgctcaaaaggaaaaagtgctgaaggttgaaaaaatt
aaaaatcaccaaattcaaatccttttatcaaaagaagctacattacgaattgatggaagt
aaattgtttgaaattgttaataaaattggtcgccatgtgaacctcggtatggcaggggaa
caaatcaaggttctgatcaaccgccgccatttatccgattcaaagttactggatacgatt
gaaacggtcatgaatcaatttcccaatgctaaaaaggaacccgtccaagcctaa
DBGET
integrated database retrieval system
