Alkalihalobacillus sp. LMS39: MM271_08800
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Entry
MM271_08800 CDS
T09200
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
alkl
Alkalihalobacillus sp. LMS39
Pathway
alkl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MM271_08800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alkl03021
]
MM271_08800 (rpoD)
Transcription machinery [BR:
alkl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MM271_08800 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
UOE95686
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Position
1833326..1834444
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AA seq
372 aa
AA seq
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MAEKPLRPLAEGDLSIDQVKEQLVELGKKRGVLTYADITEKLAVFDQDSDQIDEFFDYLG
EQGIEIINETDEVPNIQQLGKEEEEFDLNDLSVPPGIKINDPVRMYLKEIGRVPLLSAEE
EINLAKRIEDGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFD
YQKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTP
EEVSEEMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELL
KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH
PSRSKRLKDFLE
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaaaccgttacgccctttggctgaaggagatttgtcaatcgatcaagtgaaa
gaacaattagttgaattagggaaaaagagaggggttttaacatacgccgacattacagaa
aagctggcggtgtttgaccaagactctgatcaaatcgatgagttctttgattatcttggg
gagcaaggaattgaaatcattaacgagacagacgaagtacctaatatacaacaacttgga
aaagaagaagaggaatttgatttaaatgacttaagtgtgccacctggtattaaaatcaat
gaccctgttcgcatgtacttaaaagaaattgggcgtgtcccattgttatctgctgaagaa
gaaattaatttggcaaaacgaattgaagatggcgatgaagaagcaaagcgaagattagca
gaagctaacttacgacttgtcgtaagtattgcaaaacgctatgtaggtcgtggtatgtta
tttcttgatttaattcaagaaggaaacatgggacttattaaagctgtcgagaaatttgat
taccaaaaaggatataaatttagtacgtatgcaacatggtggattcgtcaggctattaca
agagccatcgcagaccaagctcgtacgattcgaattccggttcatatggtggaaaccatt
aataagcttatccgtgtccaacgtcaattattgcaagatttaggacgtgaaccaactcca
gaagaagtttctgaggaaatggatttaactccggataaagtccgagaaattttaaaaatt
gcacaagagcctgtttcattagaaacaccaattggtgaagaagatgactctcacttaggt
gatttcattgaagaccaagaagcgctcgcgccttccgatgcagctgcttatgaattactt
aaagaacaacttgaagatgttcttgatacattaacagaccgtgaagaaaatgtgctgcgt
ttacgatttggtttagatgatggacgtacaagaactctcgaggaagttggtaaagtgttt
ggtgtaactcgagaacgaattcgtcaaattgaagcaaaagcgttacgtaaattaagacat
ccaagccgtagtaaacgtttaaaagactttttagaataa
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