Alkalihalobacillus sp. LMS39: MM271_12005
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Entry
MM271_12005 CDS
T09200
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alkl
Alkalihalobacillus sp. LMS39
Pathway
alkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM271_12005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkl03019
]
MM271_12005
03009 Ribosome biogenesis [BR:
alkl03009
]
MM271_12005
Enzymes [BR:
alkl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MM271_12005
Messenger RNA biogenesis [BR:
alkl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM271_12005
Ribosome biogenesis [BR:
alkl03009
]
Prokaryotic type
rRNA helicases
MM271_12005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_22
FAF1
DUF6279
Motif
Other DBs
NCBI-ProteinID:
UOE96274
LinkDB
All DBs
Position
2415055..2416179
Genome browser
AA seq
374 aa
AA seq
DB search
MNDFVTLGVSKQLRIIIGEQGIVVPTPIQISTIPHVLEGKDIIGQAQTGSGKTLAFLLPL
LQKIQVSDSNIQALILSPTRELAIQITEEANKIVRKMNDIHVLAVYGGQDVVQQIHKLNG
HIHIVIATPGRLLDHIRRKTIDLSQINTLVLDEADQMLHMGFLQEVLAIIEQTPSSRQTL
MFSATLLEELKVIAKQYMKTPFDIRAKREKWTVADIEQYIVETTDRAKQETLRNIIDEQH
PFLAIIFCRTKRRVHRLYEALHGFRYLCDVLHGDLSQAKREEVMTRFRKAEIQYLIATDV
AARGLDVEGVTHVINYDIPHDIESYIHRIGRTGRAGEKGIAITLVAQKDKIHLAHIENEL
KVSIEKLKVAHKRK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaatgattttgttacccttggtgtatcaaagcaattacgtattataattggtgagcaa
ggtatagtcgtaccaacaccgatacaaattagtacgatccctcacgtgttagaaggaaaa
gatatcattggacaagcacaaacggggtccggaaaaacattagcctttcttttgccactt
cttcaaaaaattcaggtttccgatagtaatatacaagcattaattctttctcctacgaga
gagttagcgattcaaattacagaagaggcaaataaaatcgttcgtaaaatgaacgatata
catgtacttgctgtttatggtggacaagatgttgtgcaacaaatccataagcttaatggc
catattcatattgtaatagctactccaggtcgtttgttagatcatataagaagaaaaacc
attgatttatctcaaattaacacgcttgttcttgatgaagctgatcaaatgttacatatg
ggttttttacaagaagtgttagcgattatcgaacaaacgccttcttcaagacaaacgtta
atgttttcagctacattacttgaagaattgaaagtcatcgcaaaacaatatatgaaaacg
cctttcgatatacgagctaaacgggaaaaatggacagtggccgatattgaacaatatatc
gtggaaacaaccgatcgtgctaagcaagaaaccctacgtaacataatcgatgaacaacat
ccgtttttagcgattatcttttgtcgaacgaaacgaagggtacatcgactttatgaagcg
ttacatgggtttcgttatctttgtgatgttcttcatggagacttgtcccaagcaaaaaga
gaagaagtaatgacaaggtttaggaaggctgaaattcaatatttaattgctacagatgtt
gcggcaagagggttagatgtcgaaggtgtgactcacgtgattaactatgacattcctcat
gatatcgaaagctatattcatcgaatcggaaggacaggtcgggcgggagaaaaaggaatt
gcgattacattagtcgcacaaaaggataaaatacatcttgcacatattgaaaacgagttg
aaagtatccattgaaaagttaaaggtagcacataaacgtaaatga
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