Alkalihalobacillus sp. LMS39: MM271_14175
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Entry
MM271_14175 CDS
T09200
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alkl
Alkalihalobacillus sp. LMS39
Pathway
alkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM271_14175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkl03019
]
MM271_14175
03400 DNA repair and recombination proteins [BR:
alkl03400
]
MM271_14175
Enzymes [BR:
alkl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MM271_14175
Messenger RNA biogenesis [BR:
alkl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM271_14175
DNA repair and recombination proteins [BR:
alkl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MM271_14175
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Helicase_C_2
AAA_30
SNU71_RBD
Motif
Other DBs
NCBI-ProteinID:
UOE92391
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All DBs
Position
complement(2850221..2851729)
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AA seq
502 aa
AA seq
DB search
MSLETQLQFYFGYRSFREGQKEIIETIMDKQDLLAVLPTGTGKSICYQLPALLLEGTAIV
VSPLLSLMEDQVQQLHSIGIKKVAALNSFLSWEERQFVLKRIHQYKLLYVSPEILQSHFV
LEKLKMIPISMFVVDEAHCISQWGHEFRTDYLKLKEVRKQVGQPPCLALTATATKEIQQD
IIEHLHLHNEKKIIHSVDRKNIALHVEQCDSAIGKVERLTEFVNGLQGPGMVYFSSRQLA
EKMAEHLQQNGNQRITYYHGGLRSEDRILIQQQFMNGQLDVVCCTSAFGMGINKQDVRYV
IHFHFPGQMEAYLQEIGRAGRDQKQSLAILLYTNDDWHVPVSLIEQELPSNKQIEQVTAL
LANTTVITPETERHIQQMAAIHENIWRYVKYQLEKDHILLRDGKVNKHIHFDSFGEKLKK
IVEERKTAKMKKINEMERWVLQQDCRRKAYLRYFDEILNEKPEQCCDKCGLSLHLYEKIR
KEENEKENTWRQDLMEIFHQTE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagcttagaaacacaattgcaattttattttggctatcggtcatttagggaaggacaa
aaggaaattattgaaacgattatggataagcaagatctactcgctgttcttcctacaggc
actgggaagtcgatttgttatcaactgccagccttacttttagaaggtacggctattgtt
gtttcgccgctattatcgttaatggaagaccaagttcaacaattgcatagtatcggaatc
aaaaaagtagcagcacttaacagttttttatcatgggaagaacgacaatttgtattaaag
aggatacatcagtataagttgctttacgtatcaccagaaatactccaatctcattttgtt
cttgagaagttaaaaatgataccgatatccatgtttgtcgttgatgaagctcattgtatt
tcgcaatggggacatgaatttcgaacagattatttaaaattaaaagaggtccgtaaacaa
gtaggacaacctccatgtcttgctttaacggcaaccgcgacaaaggaaattcaacaagat
atcattgaacatttgcatctccataatgaaaaaaaaatcatccattcagttgacagaaaa
aatattgctttacatgtagaacaatgtgattctgctatcggaaaagtagaaaggttaaca
gaatttgtgaatggtttacaagggccaggcatggtttacttttcgagtagacagcttgca
gaaaagatggccgaacatcttcaacaaaacgggaatcaacggattacatattatcacggt
ggattacgttctgaggaccgaatcctaattcagcagcaatttatgaatggccagcttgat
gttgtttgttgtacgagtgcattcggtatgggaattaataaacaagatgttcgttatgtt
attcactttcattttccagggcaaatggaagcttatttacaagaaataggaagagcgggt
cgtgaccaaaagcaaagcttggccattttattatatacaaatgatgattggcatgtacct
gtatcgctaattgagcaagagttaccatcgaacaagcaaattgaacaggtcacggcactt
ttagcaaatacaacagtaatcactcctgaaacggaacgacatattcaacaaatggccgct
attcatgaaaatatatggcgatatgtaaagtatcaactagaaaaagatcatattttatta
cgagatggaaaagtcaataaacatatccactttgattcttttggagaaaagctaaagaaa
atcgttgaagaaagaaaaactgcaaaaatgaaaaaaatcaatgagatggaacggtgggtt
ctgcaacaagattgtagacgaaaggcttatcttcgttattttgatgaaatattaaatgag
aaaccagaacaatgttgtgataaatgcggtttgtcacttcatttatatgagaaaataaga
aaagaagagaacgagaaagaaaatacatggcggcaagacttaatggagatatttcaccaa
acggaatag
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