Alkalihalobacillus sp. LMS39: MM271_16290
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Entry
MM271_16290 CDS
T09200
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alkl
Alkalihalobacillus sp. LMS39
Pathway
alkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM271_16290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkl03019
]
MM271_16290
03009 Ribosome biogenesis [BR:
alkl03009
]
MM271_16290
Enzymes [BR:
alkl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MM271_16290
Messenger RNA biogenesis [BR:
alkl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM271_16290
Ribosome biogenesis [BR:
alkl03009
]
Prokaryotic type
rRNA helicases
MM271_16290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UOE92776
LinkDB
All DBs
Position
complement(3288975..3290576)
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AA seq
533 aa
AA seq
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MSYFTSFEISDVVMKAIKDMGFEEPSPIQEKAIPLILKGGDVIGQAQTGTGKTAAFGIPV
IEKVKEEDQFIQAIILTPTRELAIQVSGELQKLSKYKKIRTLPIYGGQSIGHQIKALKQG
VHVVIGTPGRIMDHIRRKTLKLDRIHTAVLDEADEMLDMGFIDDIEAILKQAKGERQTLL
FSATMPPPIKKLSYKYMQNPDVVSINRGEVTAPSIDQVYYKVLERNKLDSLCRIIDSEEI
ELGILFCRTKKGVAELTEALQARGYIADGLHGDLTQMQRDSVMKKFRDSTIEFLIATDVA
ARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEAEIK
MAIPSSNVPTFEEVVEKQQGSWKKQIESVIVEGQDNELFQNLTNELLEEHSPQSIISALM
KIAFVNDVAGEDDGYNFGETGGAKGMVRFFINVGKNVNMSPKILVDEIAELVGIPGKAIG
RIDIFDKFTFVEVPEEVAPFVYEALRHSRINGARINLEPAKPRPKREPRSFNK
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgagttattttacttcgtttgaaatatcggatgtagtgatgaaagccattaaggatatg
ggatttgaagaaccttctcctatacaggaaaaagccatcccgttaattttaaaaggtgga
gatgtcatcggacaagctcaaactgggacagggaaaaccgcagcatttgggattcctgtt
attgaaaaagtgaaagaagaagaccagtttattcaggcgatcattttaacgccaacccgt
gaattggctattcaagtatctggggaacttcaaaaattatcaaaatacaaaaagattcgt
actcttccgatttatggtggtcaatccattggtcatcaaattaaagcactaaagcaaggc
gttcatgttgtcattgggacacctggacgaattatggaccacataagaagaaagacattg
aaattggatcgaattcataccgcagttttggacgaagcggatgaaatgcttgatatgggt
tttattgatgatattgaggctattttaaaacaagcaaaaggtgaaaggcagacattgtta
ttttctgcgacaatgccaccaccaatcaaaaaattatcttataagtatatgcaaaatcca
gatgtcgtttccatcaatcgtggtgaagtaacggctccttctattgaccaagtgtattat
aaagtgttagaacgaaataagcttgactcgctttgtcggattatcgacagtgaggaaatt
gagctcggtattcttttctgccgtacaaaaaaaggtgtagcagaattaacagaggcactt
caagctagaggctatattgccgatggacttcatggtgatttaacgcaaatgcaacgagat
agtgtaatgaagaaattccgtgattcgacgattgagtttttaattgcaacagatgttgcc
gctagaggaattgatgtcgacaatgtaacacatgttattaactatgatattccacaagat
ccagaaagttatgttcaccgtattggacgtacaggacgagcgggccgtaaaggattagct
ttaacccttgttactccgcgagaaatgaagcacttacgatctattgaagcagaaataaaa
atggcgattccttcttccaatgttcctacatttgaagaggttgtggaaaaacaacaaggc
tcatggaagaaacaaattgaatctgtgattgtagaaggtcaagataatgaattgtttcag
aatttaacaaatgaactccttgaagaacattctccacaatcgattatttcagccttaatg
aagattgcatttgtaaatgatgtcgctggtgaagatgatggttataatttcggtgaaact
ggtggcgcaaaagggatggtcaggttctttattaatgtcggtaaaaatgtgaatatgagt
ccgaaaatattagtggatgaaattgctgaacttgtaggaattccaggaaaagcaattggt
cgcattgatatctttgataaatttacatttgtagaagtacctgaagaagtggctccgttt
gtttatgaagcccttcgtcattcaagaatcaatggagcaagaattaatcttgaacctgca
aagccaagaccgaagcgtgaacctcgctcgtttaataaataa
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