Alkalihalobacillus sp. LMS39: MM271_16710
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Entry
MM271_16710 CDS
T09200
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
alkl
Alkalihalobacillus sp. LMS39
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alkl03032
]
MM271_16710 (topA)
03400 DNA repair and recombination proteins [BR:
alkl03400
]
MM271_16710 (topA)
Enzymes [BR:
alkl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MM271_16710 (topA)
DNA replication proteins [BR:
alkl03032
]
Prokaryotic type
DNA Topoisomerases
MM271_16710 (topA)
DNA repair and recombination proteins [BR:
alkl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MM271_16710 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
UOE92851
LinkDB
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Position
complement(3369858..3371933)
Genome browser
AA seq
691 aa
AA seq
DB search
MADYLVIVESPAKAKTIGKYLGKKYIVKASMGHVRDLPKSQMGVDVERSFDPKYITIRGK
GPVLKELKSAAKKVKRIYLAADPDREGEAIAWHLAHSLNIDEQSDCRVVFNEITKQAIKD
AFKTPRPINMDLVDAQQARRVLDRLVGYNISPILWKKVKKGLSAGRVQSVAVKMIIDREK
EIQAFVPEEYWTIQGLFKMNNEQFEAKFYGVDNKKVELKSEDDVKQVLGQLKGDSFSITS
VKKKERKRNPVAPFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDLGKEGTVGLITYMR
TDSSRISDTAKEETKQYIEEQYGQEYTRKGERTTKNSDKKTQDAHEAIRPTSVLYDPKTV
KSFLSRDQFRLYKLIWERLVASEMAPAIMDTMTVDLDNAGVVFRATGSKVKFPGFMKVYI
EGNDDGKKEEDKLLPDLEEGASVKKEEITPNQHFTQPPPRYSEARLVKTMEELGIGRPST
FAPTLDTIQRRGYVALDDKRFVPTELGEIVIELISEFFSEILDVEFTAKMENDLDSVEEG
EKNWIQIIDHFYHEFEKQVKHAEEEMEEVEIKDEPAGESCEKCGHDMVYKMGRYGKFMAC
SNFPDCRNTKAIVKDIGVSCPTCKEGKIVERKSKKRRTFYGCDQYPSCEFVSWDKPIART
CPKCDSMLVEKKSKKGTQVECVSCDYKEERL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcagattacttagtaatcgttgaatctcccgctaaagcaaagacaattggtaaatac
ttagggaagaaatatatcgttaaggcatcaatgggacatgttagagatttgccgaaaagt
caaatgggagtagatgttgaaagaagtttcgacccgaaatatatcacgattcgtggtaag
ggtccagttttaaaggaattaaaaagtgcagcaaaaaaagtcaaacgtatttatttagca
gctgacccggatcgtgaaggggaagcaattgcttggcaccttgcccatagtctaaatatt
gatgaacaatcagactgtagggttgtgtttaatgaaattacaaaacaagcgattaaagat
gcttttaaaacaccacgtccaattaatatggatttagtagatgctcaacaagcacgtcgt
gtgttagataggcttgttggttacaatattagtcctatattatggaagaaagtgaaaaaa
ggattaagtgccggtcgtgtccaatcggtagctgttaaaatgataattgaccgtgaaaaa
gaaattcaagcttttgttccagaggaatactggacaattcaaggtttatttaaaatgaac
aatgagcagtttgaagctaagttttatggtgtggacaataaaaaagttgaactaaaatct
gaggatgacgtaaagcaggttcttggtcaattaaaaggagattcgttttccattacttcc
gtaaagaaaaaggagcggaaacgaaacccggttgctccatttacgacatcttctctgcag
caagaagcagcgcgaaaattaaactttcgggcgaaaaagacaatgatgttggcacaacaa
ttatatgaaggaattgaccttggtaaagaaggaactgttgggttgattacgtatatgcgt
acagattcatctcgaatttcggatacagctaaagaagaaacgaaacagtatatcgaagaa
caatacggacaagagtacactcgtaaaggtgagcggacaacgaaaaactcagataaaaaa
acacaagatgctcatgaggcgattcgtccgacatctgttttatatgacccgaagacagtt
aaatcatttttgtccagagatcaatttcgtttatataagcttatctgggaacgcttagtc
gcaagtgaaatggcaccagcgattatggatacaatgactgtagacttagataacgcggga
gttgtatttcgagcaacaggctcaaaagttaaatttcctggtttcatgaaagtgtatatc
gaaggaaatgatgatgggaaaaaggaagaagataaattacttcctgacttagaagaaggc
gcttcagttaagaaagaggaaattacaccaaatcagcattttacacaaccgccaccacgt
tattcagaggcaagattggtaaagacaatggaagagttaggaattggtcgaccatctact
tttgccccaactcttgatacgattcaacgtcgtggatatgttgctttagatgataagcgt
tttgttccgacagagttaggagaaatcgttatcgagttaatttctgaatttttctcagaa
atcttggatgtagaatttacagcgaaaatggaaaacgaccttgactcagttgaagaaggt
gagaaaaactggattcaaattatcgatcatttctaccatgaatttgaaaagcaagtgaaa
catgctgaagaagaaatggaagaagtcgaaatcaaagatgagcctgcaggagaatcatgt
gaaaaatgtggccatgacatggtttataaaatgggacgttacggcaagttcatggcatgt
tccaactttccggattgtcgaaatacaaaagcgattgtaaaagatattggtgtaagttgt
ccaacttgtaaagaaggaaaaattgtcgaacgaaaaagcaaaaaacgacgtactttttat
ggttgtgaccaatatcctagctgtgaatttgtttcatgggataagccgattgcaaggaca
tgtccaaagtgtgatagcatgcttgtagagaaaaagtcgaaaaaagggacacaagtcgag
tgtgtgtcttgtgattataaagaagagcgattatag
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