Alkalihalobacillus sp. LMS39: MM271_21535
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Entry
MM271_21535 CDS
T09200
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
alkl
Alkalihalobacillus sp. LMS39
Pathway
alkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM271_21535 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkl03019
]
MM271_21535 (rnr)
03016 Transfer RNA biogenesis [BR:
alkl03016
]
MM271_21535 (rnr)
Enzymes [BR:
alkl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MM271_21535 (rnr)
Messenger RNA biogenesis [BR:
alkl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MM271_21535 (rnr)
Transfer RNA biogenesis [BR:
alkl03016
]
Prokaryotic type
tRNA degradation factors
MM271_21535 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_HELZ2
OB_Dis3
WHD_MCM
MarR_2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
UOE93731
LinkDB
All DBs
Position
complement(4377986..4380328)
Genome browser
AA seq
780 aa
AA seq
DB search
MGVSEQQVEKILHYMREEVTKPVSVTELEEAFGLQDSSDFKEFVKLLNDMEDKGLIVRTR
SNRYGLPDKMNLVRGRVQANAKGFAFIIPEEEFEGKDVYVSNLDLGNAMNGDTVLVRLHP
KSTGARPEGEVIRIIERGLKEVVGTFVDSEHYGFVVADDKRIPNDIFIPKNADKGAVAGH
KVVVKITKYPEGKMSAEGEVVTILGHKNDPSIDILSIIHKHGLPGEFPQDVIDQAEKVPD
SISEDEIGKRRDLRDKTIVTIDGADAKDLDDAVNVEKLDNGNYKLGVHIADVSYYVKEGS
PIDLEARERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPDGQVVHHEI
FESVIRTTERMTYKDVRDILTEADEEVTKRYESLIPFFKLMEELAAILRKKRFERGAIDF
DFKEAKVLVQEDGKPTDVVIRERSVAEKLIEEFMLAANEAVAEHFHWMKVPFIYRIHEDP
DAEKLTKFLEFITNFGYVVRGNANTVHPRALQKLLDEVRGEPEETVISTVMLRSMQQAKY
DPHSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLVEGRVDEQTQSLWNEKLPEIAK
HSSEMERRAVEAERETDEVKKAQYMEDKIGETFTGMISGVTNFGIFVELENTIEGLVHVS
YLTDDYYHYDEKQYAMIGERTGNVFRIGDGLEVRCVNVNVDEASIDFEIVGMKGERKTER
KARPKVIVGGERRKKPGDRKKGASSSGTSGAGDKKAPKKKKKFYENAPRNKRKKGKKKPK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgtctgaacagcaagttgaaaaaatattgcattatatgcgagaagaagtgaca
aaaccagtttcagtgacagaattagaggaagcatttggattacaagattcaagtgatttt
aaagaattcgtcaaactattaaatgatatggaagataaagggttaatcgtgagaacacga
agcaatcgttatggtttacctgacaaaatgaaccttgttcggggtcgggtccaagcgaat
gcaaaaggatttgcctttattattccagaagaagaatttgaaggcaaagatgtgtacgta
tctaacttagatttaggaaacgccatgaatggagatacggttcttgtccgtctccacccg
aagtcaacgggtgctaggccagaaggtgaagttatccgtataattgaacgtggattaaaa
gaagttgtcggaacatttgtcgatagtgaacattatggttttgttgttgctgatgataaa
cgaattccaaatgatatctttatcccgaaaaatgcagataaaggtgctgttgcaggtcat
aaagtcgttgttaagatcacgaaataccctgaaggtaaaatgagtgcagaaggggaagtt
gtaactattcttggtcataaaaatgaccccagcatcgatattttatcgattattcataaa
catggtctgccaggggaatttccacaagatgtaattgaccaagctgaaaaagtcccagat
tcgatttctgaagatgaaattggaaaacggcgtgatttacgtgataaaacaatcgtgacg
atcgacggagcagatgcaaaagatttagatgatgctgttaatgtagaaaaattagacaat
gggaattataaattaggcgttcatattgccgatgttagttattatgtaaaagaaggttca
ccaattgatttagaggcgagagaacgggcaacgagtgtttatttggttgaccgtgtaatt
ccgatgattcctcatcggttatcaaatgggatttgtagtttgaacccgaaagtggacagg
ctaacattatcttgtgaaatggaaattacaccagatggtcaagttgttcatcatgaaatt
tttgaaagtgtcattcgtacaacagaacgtatgacgtataaagatgttcgtgatatttta
acagaagctgatgaagaggtcacaaagcgatatgagtctcttattccattttttaaatta
atggaagagttggcagcgatattacggaaaaaacgctttgaacgcggagctattgacttt
gattttaaagaagcaaaagtgctggtgcaagaagatggaaaaccgacagatgtcgttatc
cgagaacgttcagtggcggaaaagctcattgaagaatttatgttggcagctaatgaagct
gttgccgagcatttccactggatgaaggttccatttatttaccgtattcatgaggaccct
gatgcagaaaagctaacaaaattccttgaatttattacgaactttgggtatgtggtgcgt
ggaaatgccaacacggtccacccacgcgcattacaaaaattattagatgaagttcgagga
gaacctgaagaaacggttatcagcacagttatgttacgttcgatgcagcaagcgaaatat
gatccacatagcttaggacattttggcttgtcaacggaattctatacgcattttacgtca
ccgattcgtcgttacccagacttaatcgtacaccgacttatacgtacgtatttagttgaa
ggacgagtggatgaacaaacacaaagtttatggaatgaaaagcttccagaaattgcgaag
cattcgtctgaaatggagcgtcgagctgttgaagcagaacgtgaaacagatgaagtgaaa
aaagctcaatatatggaagataaaattggtgagacattcacaggaatgattagtggtgtc
actaactttggaattttcgttgaattggaaaacacaattgaaggacttgttcatgtcagt
tatttaacagatgactactatcattacgatgaaaaacaatatgctatgattggcgaacgt
acaggaaatgtgtttcgaattggagatgggcttgaagttcgttgtgtcaatgtaaatgtc
gatgaggcatcaattgactttgaaatcgtcggcatgaaaggtgaacgaaaaacagaacgt
aaagcgcgtccaaaagtgattgttggaggcgagcgtcggaaaaagccaggtgaccgtaaa
aaaggagcaagttcatctggaacttccggagcaggtgataaaaaagcaccaaagaagaag
aaaaagttttatgaaaatgctccgagaaataaacgaaaaaaagggaaaaagaagccgaaa
taa
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