Alkalihalobacillus sp. LMS39: MM271_22810
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Entry
MM271_22810 CDS
T09200
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
alkl
Alkalihalobacillus sp. LMS39
Pathway
alkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM271_22810 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alkl03021
]
MM271_22810 (rho)
03019 Messenger RNA biogenesis [BR:
alkl03019
]
MM271_22810 (rho)
Transcription machinery [BR:
alkl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MM271_22810 (rho)
Messenger RNA biogenesis [BR:
alkl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MM271_22810 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UOE93969
LinkDB
All DBs
Position
complement(4651840..4653108)
Genome browser
AA seq
422 aa
AA seq
DB search
MGVNIAELENMKLKELYELAREYKVSYYSKLNKKELIFAILKGQAEQDGLMFMEGVLEII
QSEGFGFLRPINYLPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYHGLLHVEAV
NGEDPDTSKERPHFPALTPLYPQEKIQLETAPKRVSSRIIDMVSPVGFGQRGLIVAPPKA
GKTSLLKEVANSIVENHPHVELIVLLIDERPEEVTDIERSVPAEVVSSTFDEVPENHIKV
TELVLERAMRLVEHKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVETGSRMDDVIYEEFKGTGNMEVHLDRKLAERRIFPAIDIRR
SSTRKEELLIPKEHLDKLWAIRKSMNDSAEFVDHFIRRIKETKTNEEFFESIEKDMNGPK
RK
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttaacattgcagagttagaaaatatgaagctgaaagagctttatgaactcgca
cgagagtacaaagtatcctattacagtaaattaaataaaaaagagcttatttttgcgatt
ttaaaaggacaagctgagcaagatggcctgatgtttatggaaggcgttctagaaattatc
caatcagaagggtttggcttcctaagacctattaactatttgccaagctcagaagatatt
tatatttcagcgtcacaaatccgtcgttttgacttgcgaaacggggataaagtatctgga
aaagtccgccctccaaaagaaaatgaacgatatcatgggttattgcatgtggaagcagta
aatggggaagacccggatacgtcaaaagagcgaccgcatttcccggcattaactccttta
tatccacaggagaaaattcagctagagacagctccaaaacgagtttcttcccggattatt
gacatggtttctccagtaggatttggacagcgtggattaattgttgcgccaccaaaagca
gggaaaacgtcattattaaaagaagtggcaaacagtattgttgaaaatcatccacatgtg
gagttaatcgtacttttaatcgatgagcgtccagaagaagtaacagacattgaacggtca
gttccagctgaagtcgtaagttctacatttgatgaagttccagaaaatcatattaaagtg
acagagcttgttttagaacgagcaatgcgtttagttgaacataagaaagacgttgttatc
ttaatggatagtattacgagattagctagagcgtataatcttgttattcctccaagtgga
agaacattatcaggggggattgaccctgcggcatttcatcgtccaaaacgtttctttggg
gcagctcgtaatattgaagaaggtggaagtttaacgattttagcgacagcgctagtcgaa
acaggttcacgtatggatgacgtcatttatgaagaatttaaaggaacaggaaatatggaa
gttcatcttgaccgtaagcttgcagaacgtcgtatattccctgccattgacatccgtcgt
tcaagcacaagaaaagaagagctgttgattccaaaagagcatcttgataagctttgggcg
attcgtaaatcgatgaatgattcagctgagtttgtcgatcattttattcgccgaattaaa
gaaacaaaaacaaatgaagaattctttgagtcgattgaaaaagatatgaatgggccaaaa
cgaaaataa
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