Alkalimarinus alittae: NKI27_03325
Help
Entry
NKI27_03325 CDS
T08567
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alkm
Alkalimarinus alittae
Pathway
alkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NKI27_03325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkm03019
]
NKI27_03325
03400 DNA repair and recombination proteins [BR:
alkm03400
]
NKI27_03325
Enzymes [BR:
alkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NKI27_03325
Messenger RNA biogenesis [BR:
alkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NKI27_03325
DNA repair and recombination proteins [BR:
alkm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NKI27_03325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
DDE_3
DUF6303
Motif
Other DBs
NCBI-ProteinID:
UZE96796
LinkDB
All DBs
Position
754290..756236
Genome browser
AA seq
648 aa
AA seq
DB search
MTADLHALLQTHFGFSSFRPGQAEVVQAITEGRSAAAIFPTGSGKSLCYQLSALYLPHLT
LVVSPLLALMHDQLDFLAQKGIKAASIDSTQSREESVEVMNGVRSGHIKILMISVERLNN
ERFRHFLRQIPISLLVVDEAHCISEWGHNFRPDYLKLPQYRQEFNIKQTLLLTATATPQV
IQDMGQKFGIDSNDITLTGFYRANLNLDVQGVKAEDKITCLSQWLNGRTHQSGIIYVTLQ
QTAEHVAEQLRQLNIPAQAYHAGMDSERRQSIQQQFMTGELGIIVATIAFGMGIDKSDIR
FVAHYDLPKSIENYAQEIGRAGRDGQPSDCLVLANGDNLNVLENFVYGDTPELSAIQYAL
NDILSSSTQPSGQGTPQWEMVLNSLSNQSNIRPLSLKTLLVYLEIFEIIKPVYSYFAEYK
YKFLQSQEEVIARFKGERQAFVKAIVESSDKARTWATVNFERLNQAYPSERSRALTALGY
LDEQGMIELQTKQMTQVYDVLNPTVDPSSLAASLFERFRSKEQSEINRIHQLVAFFTSET
CLSRQLAAYFADHQLQSDCGHCSVCRGYSASLPPAPNLKPLEQFDFERLSQEIVIKLGDA
ASTVLISRFLCGLTTPIFTRLKARSLPGFGALEFYRFADVVNWVERQR
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgacttacacgcgctattacaaacacactttggtttttcgtcttttcgccca
ggtcaggccgaggtggttcaagccattaccgagggtagaagtgcggcggccatctttccg
acgggctccggtaagtctttatgttatcagctatcagcactttacttaccgcatctcacg
ttagtggtttcgcctttattagcgttaatgcacgatcagttagactttctcgcccaaaaa
ggcattaaggcggcgagtatcgattcaactcagagtcgagaagagtctgttgaggtgatg
aacggcgttcgttcagggcacataaagattttgatgatctcggtcgagcgactcaataat
gaacgctttcgccattttctgagacaaataccgatttctttattggtggttgatgaagct
cactgtatttctgagtgggggcataacttcaggcccgactatcttaaattgccgcaatac
cgacaagaatttaatatcaagcaaaccttattgctgaccgcgaccgctaccccgcaagtg
atccaagatatggggcagaagtttggtattgattctaacgacatcaccctaacaggcttt
tatcgcgctaatttaaatttagacgttcaaggggttaaagccgaagataaaataacctgt
ttgagtcagtggcttaatgggcgaacgcatcaatcaggtatcatttacgtcaccttgcaa
caaaccgctgaacacgtggctgaacagcttaggcagttgaatataccggctcaggcttat
catgcaggcatggacagtgagcgacgccagtcgattcaacaacagtttatgacgggggag
ttgggtattatcgtagcgaccattgcctttggcatgggcattgataaaagtgatatccgc
tttgtggcgcattacgacttacctaaatcgatcgaaaactacgcacaagaaatcggtcga
gcagggcgtgatggtcagccatcagattgtttagtgttggccaatggggataacctcaat
gtgctcgaaaactttgtctatggcgacaccccagaactttctgctattcagtatgcattg
aatgatatcctcagcagttcaactcaaccgtccgggcagggtacaccgcaatgggaaatg
gtgctcaatagcctatcgaatcaatccaatatacgtccactgagccttaaaacactgctg
gtgtatctcgaaatatttgaaatcattaaaccggtttatagttatttcgcagaatataag
tacaagtttttgcaatctcaagaagaggtgatcgcgcgctttaagggtgaacggcaagcc
tttgtgaaggcgattgttgaatcatctgataaagcccgcacttgggcaacggtaaatttt
gagcgccttaatcaggcttaccccagcgagcgtagtcgtgcgttaactgcgttagggtat
cttgatgagcagggtatgattgaactgcagacgaagcagatgacacaagtgtatgacgta
ttaaaccccaccgttgacccatcgtcattggcggcctcgctgtttgagcgttttcgatca
aaagagcagagtgagattaaccgtattcatcagttggtggcgttttttaccagtgagact
tgtttaagcaggcagttggcggcttactttgctgatcatcaactacagtctgattgtggc
cattgttcggtatgtcgcggctattcggcctctttgcctcccgcgcctaatttaaagcct
cttgagcagtttgactttgagcgcttaagccaagagatagtgataaaactcggtgatgcc
gcttcaacggtattgattagccgttttctatgtggcctgacaacgcctatttttacgcgt
cttaaagcgcgatcattacctggttttggcgcgcttgaattttatcggtttgccgatgtg
gttaactgggttgaacgtcaacgttag
DBGET
integrated database retrieval system
