Alkalimarinus alittae: NKI27_04925
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Entry
NKI27_04925 CDS
T08567
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
alkm
Alkalimarinus alittae
Pathway
alkm03030
DNA replication
alkm03430
Mismatch repair
alkm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NKI27_04925 (holA)
03430 Mismatch repair
NKI27_04925 (holA)
03440 Homologous recombination
NKI27_04925 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alkm03032
]
NKI27_04925 (holA)
03400 DNA repair and recombination proteins [BR:
alkm03400
]
NKI27_04925 (holA)
Enzymes [BR:
alkm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NKI27_04925 (holA)
DNA replication proteins [BR:
alkm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NKI27_04925 (holA)
DNA repair and recombination proteins [BR:
alkm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NKI27_04925 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
nSTAND1
DNA_pol3_gamma3
COMM_HN
EVC2_like
Motif
Other DBs
NCBI-ProteinID:
UZE97096
LinkDB
All DBs
Position
complement(1111555..1112571)
Genome browser
AA seq
338 aa
AA seq
DB search
MKLKPEQLKSHLSNQLLPVYLINGDEALLVQESCDEIRKKCRDEGFTERLSWHADRQFDW
NQLLEEAGSLSLFGDKKIIEIRIDNGKPGDKGSKAIEQFCQATSEDTVLLIITGRLDAST
QKRKWVSTVDKIGGMVTLWPISAEQLPNWIQQRSRQMGLTLDQESVSLLTERVEGNLLAA
KQELEKLALLCPDGKITPEQVTQSVADSARFDIFNLTDECIKGASKHALHVLQGLKSEGT
EPPVILWALARELRVVYDLSNSNRLGQPAQSVFKAHRVIAKRQSLLSHAASRLSHQQLNQ
LIKLSERIDQSIKGSKQYGSSWELLAEFVLLLSGKSLP
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttaaacctgaacagctaaaaagccacctttcaaatcaacttctccctgtttat
ttaataaacggggatgaagcactgcttgttcaagagtcttgtgacgaaattagaaaaaag
tgtcgcgatgaaggttttacggaacgtttaagctggcatgctgatcgccagttcgactgg
aaccaactactagaagaagctggaagcctatcactgtttggcgataaaaaaattatcgag
attaggatagataacggcaaaccaggtgataaaggtagtaaagccattgaacagttttgc
caagcaacctctgaagataccgtcctactgattattaccggccgccttgatgcatcaacg
caaaagagaaaatgggtcagcaccgtcgataaaataggcggtatggtaaccctatggccc
attagcgcagaacaactccctaactggattcagcaaagaagtcgtcaaatggggttaact
cttgatcaggaatccgtttcgctactgacagaacgagtagaaggcaacctactcgctgcg
aagcaagaactcgaaaagttagcactactctgccctgacggaaaaatcacccctgaacaa
gttacgcagagtgttgccgacagtgctcgcttcgatatatttaacctaacggatgaatgt
atcaaaggcgcctctaaacatgcacttcatgtacttcaaggactaaagtctgaaggaaca
gaacctcccgtaatactctgggcattagcacgagaactacgcgttgtttatgacttgtct
aatagcaatcgtctagggcaacccgcccaatcagtctttaaagcacatagagtaatagcc
aagcgacaaagcttacttagccatgcagcctcaagactgtctcatcaacagctcaatcag
ctaattaaactctctgagcgcattgatcaaagcattaaagggagtaaacagtatggttca
agctgggagttactcgccgaatttgttcttctactaagtgggaaatctctaccttga
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