Alkalimarinus alittae: NKI27_06285
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Entry
NKI27_06285 CDS
T08567
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
alkm
Alkalimarinus alittae
Pathway
alkm03030
DNA replication
alkm03430
Mismatch repair
alkm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NKI27_06285 (dnaE)
03430 Mismatch repair
NKI27_06285 (dnaE)
03440 Homologous recombination
NKI27_06285 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alkm03032
]
NKI27_06285 (dnaE)
03400 DNA repair and recombination proteins [BR:
alkm03400
]
NKI27_06285 (dnaE)
Enzymes [BR:
alkm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NKI27_06285 (dnaE)
DNA replication proteins [BR:
alkm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NKI27_06285 (dnaE)
DNA repair and recombination proteins [BR:
alkm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NKI27_06285 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UZE97355
UniProt:
A0ABY6N5F7
LinkDB
All DBs
Position
1385666..1389142
Genome browser
AA seq
1158 aa
AA seq
DB search
MSVPFVHLKVHSEFSLVDGTIRLKPLMKKLASYKMPAVALTDQSNMCALVKFYNGAMGAG
IKPIIGVDLWLRNLDEDDNPSRITLYARNDVGYRNITELVSRGFTEGQRYDKAIIDKEWI
EDASEGVIALSGAKIGEIGRALLSGKKELAKERLRYWMSVFPDSFYLELQRTGRVNDEEC
LHLSVELATEMGCPVVATNDVHFMETEDFEAHETRVCIHDSCTIDDPRRNKFYSPEQYLK
SPEEMAELFSDIPEALENTLEIAKRCNVEVQLGEYFLPNYPIPEGMTMDEFFRKISQEGL
EERLETILDKNADDYQDRRQPYLDRLKFELDIIIQMGFPGYFLIVMDFIQWSKNNDIPVG
PGRGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDIDFCMDGRDRVIAYVA
DNYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEIGMTLAKAVDMEA
PLREFIEQDEDAQEIWEMALKLEGITRNTGKHAGGVVIAPTKLTDFSPLHCDEEGDGLVT
QFDKNDVESAGLVKFDFLGLRTLTIVDWALKMINARKMAHDPVNIDRIPLDDPPSFALLK
RAETTAVFQLESRGMKDLVNRLQPDDLEDMIALVALFRPGPLESGMVDDFIARKHGKADV
AYPHVDFQHECLKPILEPTYGVIVYQEQVMQIAQALAGYTLGGADMLRRAMGKKKPEEME
KQRAIFAEGAKGQGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE
FMAAVLTADMQNTDKVVILVEECRRMGLDLVLPDVNVSEYTFTVDENDRVVYGLGAIKGL
GEGPIESLIEARQAGGPFTSLFDFCDRVDMKKVNKRALEALIKSGAMDNIGPSRGRLMAS
IGEAGRRADQNSRNQSAGMDDMFGEVISDEAEDVYAETKNIREWSEKERLKLEKDTLGLY
LTGHPFDEYEKEVRQFAKTPIADIQPGKGNINIAGLIVAVRTMKNKKGNTMAFVTIDDRT
ARTEIAFFSDSYEQNKDLLVSDTILVVEGEVSIDDYTGSTKMRVNAAYDILSARMRHAKS
LYLKVDEGVFVNGFLNELEETLTPYKGEGCKVTVDYHRSDARSMIELGRDWQVKPADELI
QGLRYVLGDTNVKMRYRD
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcccttttgtacatctcaaagtccattctgaattttcgctggtcgatggcact
attcgactaaagccgctgatgaaaaaactggcaagctataagatgcccgctgtagcgctg
accgaccagtcgaacatgtgtgcgttggtcaaattttacaacggtgcaatgggggcgggt
attaagcctatcattggtgttgatttatggcttcgcaatcttgatgaagatgataatcca
agccgaattaccttgtatgcgcgaaatgacgtcggctatcgcaatataactgagctcgtc
tctcgtggttttactgaggggcagcgttacgataaggcgattattgataaagaatggata
gaagacgcttctgaaggcgttattgcgttatcaggagcaaagattggtgaaattggtcga
gcgcttctatcaggtaaaaaagagctggctaaagagcggctccgttattggatgagcgtt
tttcctgattcgttttatcttgagctgcagcgaacagggcgggtgaatgatgaagagtgt
ctgcacttaagtgttgagctggctaccgaaatgggctgcccagtggtcgcgactaatgat
gtgcactttatggaaacggaagattttgaagcgcatgaaacccgtgtctgcatccatgat
agctgcacgattgatgaccctcgtagaaataaattttatagcccagagcaataccttaaa
agccccgaagaaatggctgagttattttcagacataccggaagcattagaaaacacgcta
gaaattgcaaagcgctgtaatgttgaggttcagttgggtgagtacttcttgcctaactac
ccgatccctgaagggatgacgatggatgagttcttccgcaagatatcccaagaggggcta
gaagaaagactcgagactattttagataaaaatgctgatgattatcaggataggcgtcag
ccttatcttgatcgattgaagtttgaactggatatcatcattcagatggggtttccgggt
tatttcttgatcgtaatggactttattcagtggtccaaaaataatgatattcctgtcggc
cctggtcgagggtcgggtgccggctctttggtggcctatgtacttaaaattaccgatctt
gatccactgcaatatgatcttctttttgagcgattcctaaaccctgaacgggtttcgatg
cctgactttgatatcgatttctgtatggatggtcgtgacagggttatcgcctatgttgca
gataactatggccgtaatgcggtatcccagattattacctttggtaccatggctgcaaaa
gcggttgtgcgagatgttgcccgtgttcaggggaagtcttacggcttggctgatcgttta
tcgaagatgattccgtttgaaatcggcatgactttggctaaagccgtggatatggaagcg
ccgttgcgggagtttatcgaacaggatgaagacgcccaagaaatttgggaaatggcctta
aaattagaaggtataacccgtaatactggtaagcatgccggtggtgtggttatcgctccg
actaagctcaccgacttttcaccgcttcactgtgatgaagaaggtgatggcttggtgact
cagtttgataagaatgatgttgaatcagcggggctcgttaagtttgactttttggggttg
agaacactcactattgtggactgggctttgaaaatgatcaatgcccgtaaaatggctcac
gacccggttaatatcgatcgaattccgttggatgatccaccgtcgtttgccttgcttaag
cgagcagaaacgactgcagtgttccagctagaatctcgcggaatgaaagatctagttaac
cgcttacagcctgatgatcttgaagatatgatcgctttggtggcactgtttagaccaggg
ccgcttgagtcaggcatggttgatgactttatcgcccgaaagcatggcaaggctgatgtg
gcttaccctcatgtagatttccagcatgaatgcttgaagccgattcttgaacccacctac
ggtgttatcgtttatcaagaacaggttatgcagattgcgcaggctttggcaggttacacc
ctcggtggtgccgacatgcttcgacgggctatgggtaagaaaaagcctgaggagatggaa
aagcagcgggcgatttttgctgaaggggctaaaggacagggaatagaccctgacttggcg
atgaagatatttgatctggttgaaaagtttgctggatacggatttaacaaatcgcactct
gcagcctatgcattggtttcttatcaaacgttatggctcaaaacccattaccctgcagag
tttatggcagcggtactgactgcggatatgcagaacaccgacaaggtggtgatactggtt
gaagaatgtcggcgaatggggctcgacctcgttttacctgatgttaatgtgagtgaatac
acgtttacggtagatgaaaatgatcgggttgtttatggactgggtgccataaaagggtta
ggtgagggaccgatagaaagtctgattgaggcgaggcaagcaggagggccatttacgagc
ttgttcgatttttgcgatcgagtcgatatgaagaaggtcaacaagcgagcccttgaagcc
ttaataaagtcaggtgcgatggataatattggccctagtcgcggtcgtttaatggcgagt
attggtgaggcggggcgacgagcagatcagaatagtcgaaatcagagtgccggcatggat
gatatgtttggtgaagtgatttctgatgaggctgaagatgtgtacgcagaaactaaaaat
atcagagagtggagcgagaaagagcgtctaaagcttgaaaaagacacgcttgggctttat
ctcacgggtcacccatttgatgaatacgagaaagaggttcggcagtttgctaaaacgccg
atcgctgatatccagccaggcaaagggaatatcaacatcgcaggactcatcgttgctgta
aggacgatgaagaataaaaaaggcaacacgatggcgtttgttacgattgatgatcgaaca
gccagaacagagatagcctttttctcagatagttatgaacagaataaagacctacttgtt
agcgatactattttggttgtggaaggtgaggtcagcattgatgattacacaggctcaacc
aaaatgagagttaacgcggcttacgacatcctcagtgcgcgcatgcgtcatgctaaatcg
ctatatttaaaagtggatgaaggggtttttgttaacggctttttaaatgaactagaagaa
acacttacgccttataaaggtgagggttgtaaagtgacggttgattatcatcgcagtgac
gctcgctcgatgatcgagttaggccgtgactggcaggttaaacctgcggatgagctcatt
caggggcttcgctatgtgcttggcgatactaatgtgaagatgcgttatcgagattaa
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