Alkalimarinus alittae: NKI27_08385
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Entry
NKI27_08385 CDS
T08567
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
alkm
Alkalimarinus alittae
Brite
KEGG Orthology (KO) [BR:
alkm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alkm03032
]
NKI27_08385 (topA)
03400 DNA repair and recombination proteins [BR:
alkm03400
]
NKI27_08385 (topA)
Enzymes [BR:
alkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NKI27_08385 (topA)
DNA replication proteins [BR:
alkm03032
]
Prokaryotic type
DNA Topoisomerases
NKI27_08385 (topA)
DNA repair and recombination proteins [BR:
alkm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NKI27_08385 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF6324
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UZE97736
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Position
1841654..1844347
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AA seq
897 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGPEFVVKSSVGHIRDLPTSGSASTSTPAERAKAAAITRK
LSPEEKIKNKKRKSKEQLIARMGVNPEKDWAANYQILPGKEKVVSELQRLAKTADTIYLA
TDLDREGEAIAWHLMESIGGDETRYRRVVFNEITKKAIQEAFKTPGELDQSRVNAQQARR
FLDRVVGFMVSPLLWSKVARGLSAGRVQSVAVRLIVEREQEIRAFNPEEFWEVYADLIAK
SDASTRFQVTKYQNENFRPVSEKETKQYTDFLNSATYTVDKREDRPTSSKPNPPFITSTL
QQAASTRLGFSVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVEACREYINKSVGAEFLN
DQPRIYSSKDGAQEAHEAIRPSNVEMMGFQVAGLEKDAERLYDLIWRQFVACQMKDAQYL
SSSITVSAGEFLLRTKGRVMKFEGYTKILPSFGKKDDDIILPDLQVGQTLDLKALDPKQH
FTKPSPRYTEASLVKELEKRGIGRPSTYASIISTIQERGYVRLQNRRFYAEKMGDIVIER
LVESFDDLMDYSFTAKMEETLDDVASGEKDWKGVLNTFYKGFTGQLEKAEAPEGGMRENQ
PTETDIPCPTCGRNMQIRTASTGVFLGCSGYSLPPKERCKSTINLVLGDEVVSVDDDDEG
ESRLLRKKKRCSICDTAMDSYLIDEQRKLHVCGNNPDCSGFEVEQGVFKIKGYDGPSLEC
DKCGSEMQLKSGRFGKYFGCTNEACKNTRKLLRSGEAAPPKMDPVQMPELACEKVEDTYV
LRDGAAGLFLAASKFPKNRETRAPLVTEILPHKDEIDPKYEFLFSAPVQDPDGNPAIIRY
SRKNKEQYVMTEVEGKASGWSAHYENSKWVETQAKKKVVKKATKKTTKKVAKKATKE
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactggtaatagtcgagtctcctgcaaaagcaaagactatcaataaatat
ctcggtcctgagtttgtcgtgaagtcgagtgtgggtcatataagagacctgccaacgagc
ggatcggcaagcacttccacgccagcagaaagagcgaaagctgctgctatcaccaggaaa
ctgagccctgaagaaaaaattaagaataaaaagcgcaagtctaaagagcagttgattgcc
aggatgggcgttaacccagaaaaagactgggccgctaattatcagatccttcctggtaaa
gaaaaagtcgtcagtgagttgcagcgattagctaaaactgctgacactatctatctcgca
acggatttggatagagagggagaggctattgcatggcatttgatggagtcgattggtggt
gatgagactcgctatagacgagttgtttttaatgaaataactaaaaaagccattcaagaa
gcgtttaaaacgccgggtgagcttgatcaatcaagagttaatgcgcagcaagctcggcgc
tttcttgatcgtgtggttggttttatggtgtcgccattactttggagtaaagtggcaaga
ggtctgtctgcaggcagggttcaatctgtagctgttaggttgattgtcgagcgtgagcaa
gaaattagagcgtttaaccctgaagagttttgggaggtatatgcagaccttattgctaag
tctgatgcttcaacgcgttttcaggttactaagtatcagaatgaaaacttcagacctgtc
agtgaaaaagaaaccaagcaatacactgattttttaaattctgccacttatacagttgat
aagcgagaagatcgcccaacaagttctaagccaaaccctccttttattacgtctacattg
cagcaggctgccagtacacgattggggtttagtgttaaaaagaccatgatgcttgctcag
aggctctatgaggctggttacatcacttatatgagaactgactctacgaacttaagtaaa
gaggctgtagaggcttgtagggagtatattaacaaaagcgttggggctgaatttcttaat
gatcagccgcgtatatattcaagtaaagatggtgcgcaagaagcccacgaagcgatcagg
ccttcaaatgttgaaatgatgggctttcaagttgctggcctagagaaagatgcagaacga
ctttatgatttaatttggaggcagttcgttgcctgtcagatgaaagatgcacaatatctg
agttcttcgatcacggtctcggctggcgagtttttgcttcgaaccaaaggtcgtgtcatg
aagtttgagggctacactaaaatcctgccgtcatttggtaaaaaagatgatgacatcatt
ttgcctgatttacaggtcggccaaactcttgatcttaaggcgcttgatccaaaacagcac
tttacaaagccttcacctagatatactgaagcgagtcttgttaaggagttggagaaacgc
ggcattggtcgtccatctacttatgcgtcgatcatatctaccatacaagagcgtggttat
gtcaggcttcaaaatcgtcgattctatgcagagaagatgggtgatattgtcatagagcgt
ttggttgagtcgtttgatgacttaatggattatagctttaccgctaagatggaagaaaca
ttagatgatgttgctagcggtgagaaagactggaagggtgtattaaacactttctataaa
gggtttacaggacaattagagaaagcagaggcgcctgagggtgggatgcgagaaaatcag
ccgacagagactgatattccttgtccaacttgcggtcgcaatatgcagattagaaccgct
agtacgggcgtatttttggggtgttcgggttattcattacctccgaaagaacgttgtaaa
agtactatcaatttagtcttgggtgatgaagttgttagtgtagatgatgacgatgaaggg
gagtcacgtcttcttcgtaaaaagaaacgttgcagtatttgtgatacagcaatggatagt
tatctgattgatgagcagcgcaaacttcatgtttgcggaaacaaccctgactgttccggt
tttgaggtggagcagggcgtatttaagattaaaggttatgatggtccgtcgcttgagtgt
gataagtgcggttcggaaatgcagctaaaatcaggacgttttgggaagtactttggttgt
accaatgaagcttgtaaaaatacgcgtaagcttctaaggagtggtgaggcggctccacct
aagatggatcctgtgcaaatgcctgagcttgcttgcgagaaggtggaagatacttatgtg
ttgagggatggcgctgcaggactgtttttggcagcaagtaagttccctaaaaatcgtgaa
acacgagcccctttagtcacagagatactgcctcataaagatgaaatagatcctaagtac
gagtttctcttttctgctccggttcaagatccagatggaaatccggctatcattcgctac
agtcgtaaaaataaagagcagtatgtgatgactgaggttgaaggaaaggctagtggttgg
tctgcgcactacgagaattcaaagtgggtggaaacacaagcgaaaaagaaagtggttaag
aaggcgactaaaaagacgactaaaaaagtggctaaaaaggccactaaagaatag
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