Alkalimarinus alittae: NKI27_08805 Help Entry NKI27_08805       CDS       T08567                                  Symbol hrpA Name (GenBank) ATP-dependent RNA helicase HrpA   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism alkm  Alkalimarinus alittae Brite KEGG Orthology (KO) [BR:alkm00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:alkm03019]     NKI27_08805 (hrpA) Enzymes [BR:alkm01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      NKI27_08805 (hrpA) Messenger RNA biogenesis [BR:alkm03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      NKI27_08805 (hrpA) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DUF3418 OB_NTP_bind Helicase_C DEAD HA2_C AAA_22 AAA_19 nSTAND3 ABC_tran WHD_HA2 NACHT NTPase_1 TsaE ResIII nSTAND_NTPase5 AAA_23 AAA_11 PhoH AAA_30 RsgA_GTPase AtuA_ferredoxin SRP54 ZapG-like Motif Other DBs NCBI-ProteinID:  UZE97815 UniProt:  A0ABY6N713 LinkDB All DBs Position 1935652..1939548 Genome browser AA seq 1298 aa AA seqDB search MTVINQNTIQAQLNDCLVKDQVFVRRRLRNVGQIKDLEKLTKALEELQSKIDRSKSRVQS RLAAVPNIQFPADLPVSQKSEEIAAAIKDNQVVVIAGETGSGKTTQIPKICMQLGRGVKG QIGHTQPRRLAARSVAMRIAEEVNSELGDIVGYQVRFNDKVSENTLVKLMTDGILLAEVQ RDRFLNAYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDVERFSKHFNN APVIEVSGRAYSVETRYRPLYESEDGDDDRTLNEAVAQSVLEIIDEEKTSKTPFGDILVF LPGEREIRDLAKYLRDYELRDTEVLPLYARLGAADQLRVFKPHRGRRIVLSTNVAETSIT VPGIRYVIDPGTARISRYSYRSKIQRLPVEAISQASANQRKGRCGRVAEGICYRLYSEED FNNRPAFTDAEILRTNLASVILKMIDLGFGQIDEFPFVDSPDKRLINDGFKLLFELGAVD SKRQMTDRGKILAKIPADPRIGRMLIEANNQGSLTEALIITSALSIQDPRERPAEKKQAA DQAHAAYKDPDSDFISFINLWNSYEEERQALSSNQLKKHCLKHYLSFMRMREWREVHRQL HLICKELKFTENPTPSSYESIHRAMLSGLLNNIGEKEDKKEYKGARNRHFHLFPGSSCYK KPPKWVVSAELVETSQVYGRINAKIEPQWIEPLAAHIAKCTHFEPHWEQKRGQVVAYERI SLYGLDIVPKRKVHYGTIDPVISRELFIRHALVQGEFRSKAPFLRENSQLIEQVDELETR IRKKDILIDDETLFDFYSERIPTDIVSGRYFESWWKKLDQAGLSGLRLTKAFVMKREADE VNESSYPDTIVLNNINFKLNYNFTPGQEGDGVSILVPKGAVRQLPLNRLEWMVPGLLREK CIQLVKSLPRSIRKQLVPVPDYVDKALKNIRPSNEPVTRVLGQQLTRITGVKIPEESWNT EAVDEHLKFNIQVVDEKGKVDQESRDVLGLMEQFKDVEFDVSVGSSQEQKQYQTEYIHWD FGELALNKEVEQGGIKLNLMPSLEDHGRFVKLALSNDRLTADKNTIKAIARLSLLALPDQ IKFILSKLPKIQQTNLLFAPYIKAVDLADDLLMGSLIQLLSTRDIPRNEDQFSAWLTECR AELHEHTCELALLLNEIAHQHHNLMKQLKGKINLALAHSMADLKFQLNHLVYSGFISQTP KEWLQHYPRYLQTAVDRFEKMAREMGNERTFLSAIDGCWEQYENLKKQHEQQGIFDLELQ NYRWMIEELRVSWFSQKLGTAMTISEKRLNKQWGLVRK NT seq 3897 nt NT seq  +upstreamnt  +downstreamnt atgactgtaattaatcagaacaccatacaagcgcaacttaatgactgtctcgttaaggat caggtatttgtgcgccgtcgcttacgtaatgtgggtcagataaaagaccttgaaaaactc actaaagcgcttgaagagctacagtcgaaaattgacagatcaaaatctcgtgttcagtca cggttggcagctgttcccaatatacagtttccagcagacttacccgttagccaaaaaagt gaagagatagcggcggcgatcaaagacaatcaggtggttgtgattgccggcgagacaggc tcagggaaaaccacccaaatacctaagatttgtatgcaattagggcggggcgttaaaggt cagattggtcatactcagcctagacgtttagcggctcgctctgtggctatgcgaattgca gaagaagtaaacagtgaattgggcgacatagtcggttatcaggtacgctttaacgataaa gtgtcagaaaatacgctagttaaactgatgacagacggcatcttgttagccgaagttcag cgagatcgctttcttaatgcttacgatactatcatcattgatgaagctcatgagcgaagc cttaacattgattttttattaggttacctaaaaagactgctacctaagcgtcctgatctt aaagtcatcattacttccgcaacgattgatgtagagcgtttctctaaacactttaataat gcccctgtaatagaagtaagcggtcgagcctatagtgttgaaacgcgttataggccgtta tatgaaagtgaagatggtgatgatgaccgaacgctaaatgaggctgtagcccagtctgtt ttagaaatcatagatgaagaaaaaacatctaaaacacctttcggagatatattggttttt ctacccggtgaacgggaaatcagagatttagctaaatatcttcgagattatgaattaaga gacacagaggtcttacctctgtatgcgcgccttggcgcagctgaccagctaagggtattt aagcctcatagaggtcgacgaattgtattatcgacaaacgttgctgaaacatcgataacg gtaccgggtattcggtatgttattgatcctggtacagcccgtatcagtcgatatagttat cgttcaaaaattcagcgtttaccggtagaagctatttctcaagccagtgcaaatcaacgt aaagggcgctgtggacgagtcgcagaaggtatttgttatcgattatatagcgaagaagac tttaataaccgtccagcgtttactgacgctgaaattctgagaaccaaccttgcatccgtt attttgaaaatgattgatttagggtttgggcagattgatgaattcccctttgttgatagt ccagataagcgactaataaatgatggttttaaactgctgttcgaattaggagctgttgat tcaaagcgacaaatgactgacagagggaaaatactcgcgaagatacctgctgacccaaga atagggcgaatgttaattgaagccaataatcaaggcagtctaaccgaagcactgattatt acgagcgcgctaagtatccaagatccaagggagcggccagcagaaaaaaaacaagcggca gatcaagcgcatgcggcttataaagatcctgattcagattttatttcatttattaatctg tggaacagttatgaagaagaaaggcaggcgctgtcaagtaatcagcttaaaaagcattgc ctcaaacattatttatcttttatgcgtatgcgggagtggcgagaagtacaccgacaactg catttaatttgtaaagagcttaagtttactgagaatccaaccccctcaagttatgagtca atccatcgcgcaatgctgtcagggttattaaataatatcggtgagaaagaggacaagaag gaatacaaaggggcccgaaatcggcactttcatttattccctggttcatcatgctataaa aaaccacctaaatgggtggtgagtgctgagctggtcgaaacctcacaagtatatggccgc atcaatgccaaaatagagcctcaatggattgaacctttagccgctcatattgctaagtgc acgcattttgaaccccattgggagcaaaagcgaggtcaagtcgttgcctatgaacggata tctttatatggccttgatatcgtccctaagcgtaaggtccactacggtactattgacccg gtcatttctcgcgaactatttattcgtcacgcattagttcaaggcgagtttcgctccaaa gccccttttctaagagagaatagtcagcttattgagcaagtcgacgagcttgaaacgcgc atacgtaaaaaagacattttgatcgacgatgaaacattgttcgacttctactctgagcgc ataccaacggatattgtaagtggacggtactttgagtcgtggtggaaaaaactcgatcaa gctgggctatcaggactacgtttaaccaaagcgtttgtaatgaagcgggaggctgatgaa gttaatgaatctagctaccctgatacgattgttcttaataatattaactttaaacttaat tataattttacgcctggccaggaaggagacggagtttctattttggtaccaaagggggct gtgaggcaattacctcttaatcgtctggagtggatggtgcctggtctattacgtgaaaag tgtattcaattagttaagtcgttgcccagatctattcgtaagcagcttgtaccggtccca gattatgttgataaagcacttaaaaatattaggccgagcaacgagccggtaacacgcgta ttagggcagcaactgacacgcattacgggtgttaaaatccccgaagaaagttggaatact gaagcggttgatgaacaccttaaatttaacatccaagtagtagatgaaaaaggtaaggtt gatcaagagagtcgggatgtgctcggcttgatggagcagttcaaagatgttgaatttgat gtttcggtcgggagcagtcaggagcaaaagcaatatcagacagaatatattcattgggat ttcggtgagctagcactcaacaaagaagttgaacaaggcggaattaaactaaatctgatg ccgtcactggaagatcatggacgatttgtaaaactagcactgtctaatgatcgtttaacg gctgataaaaataccatcaaagcgatagcaagactttcactgctggcactacctgatcaa atcaagtttattctgagtaaactacctaaaatacagcaaacaaacttactctttgcgcct tatattaaagcggtagaccttgctgatgatttattgatgggaagtttaatacagctgtta tctacacgtgatattccacgaaacgaagaccagttttcagcatggctaacagaatgtcga gctgagttacatgaacatacttgtgagttggcgttactgctgaatgagattgctcatcaa caccataatttaatgaaacaattaaaaggtaaaattaatctagctttagcgcattcaatg gccgatttaaagtttcagttaaatcatttggtctatagtggctttatttctcaaacgcca aaagagtggttgcagcactatccaaggtacttacagacggctgttgatcgttttgaaaaa atggcgagagaaatgggtaacgaacgtacattcttgtcggcgatagacggttgttgggag caatatgagaaccttaaaaaacaacacgagcagcaaggtatatttgaccttgagttacaa aattatcgttggatgattgaggaacttagggtctcttggttttctcaaaagttgggtacg gcgatgaccatctctgagaaacgattgaataagcaatggggattggtgagaaagtaa

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