Alkalimarinus alittae: NKI27_11490
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Entry
NKI27_11490 CDS
T08567
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alkm
Alkalimarinus alittae
Pathway
alkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NKI27_11490 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkm03019
]
NKI27_11490 (rne)
03009 Ribosome biogenesis [BR:
alkm03009
]
NKI27_11490 (rne)
Enzymes [BR:
alkm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NKI27_11490 (rne)
Messenger RNA biogenesis [BR:
alkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NKI27_11490 (rne)
Ribosome biogenesis [BR:
alkm03009
]
Prokaryotic type
rRNA processing factors
NKI27_11490 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UZE94704
UniProt:
A0ABY6MXZ7
LinkDB
All DBs
Position
2523775..2526585
Genome browser
AA seq
936 aa
AA seq
DB search
MKRMLINATQAEELRVALVDGQKLYDLDIESSTREQKKANVYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSSSREGRINIKDVIAEGQEVIVQVDKEERGNKGAALTTFV
SLAGRYLVLMPNNPRAGGISRRIEGEDRNQLREAIAGLEIPKQMGAIVRTAGVGRNTEEL
QWDLDYLHQFWESITHAAESRKAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSPEVYEDV
VNFVQSVMPAYENKIKLYEDDIPLFSRYQIEAQIETAFQREVKLPSGGSIVIDPTEALVS
IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDMGGLIVIDFIDMSPVRNQREVES
RMRQALELDRARVQVGKISRFGLLEMSRQRLRPSLGETRNEVCPRCSGQGSIRSIDSMAL
SIMRLMYEESSKEKTTEVRALLPISVATFLLNEKRAQIAEIEKNQGVTIVIVPTETMETP
HYEVLRMRDDESIDDTVSYELKSEAPEHQPTATPTVKQAVREEAAVKTLKPSAPTPAPTS
EEIGLLKKLSQKIASLFGGNAEEEKKAEVKPEPRTRQQTSRNTQRNRPERGGKPSNRGGR
QKQTRNDAPAKLARNTSQETTPQSKNTNAATPSTDENRRPRRNRNSKPTDQRNRPNKSGD
NRSNERNTSNRSTGAADKQNATAAPEPVKMQETAMKPQQQTDSAVASAPQTSQPSQESKA
NQEKPAERKRTPRRAPSNRRAENNENSQSHTNSETKAPGAKVSDPAQETQESKPVNAGRP
SAPKTTESAASAPAKAIEEKSTTATASPKPAKADKKDESVVKPEAPKVVTAKVEAPKAEA
PKAEAPKAEAPKAEAPKAEAPKAEVSKAEAPKAEAKPTESQSNEGEASNKPAQPRRKRGS
RAANDPRLRRKQESASANTSPEASANTDSPSEKTDS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctaattaacgcgactcaggcagaagagttacgcgttgcgcttgtagat
ggtcagaagctatatgacctggacatagaatcaagtacccgcgagcaaaaaaaagcaaac
gtctataagggcagaattactcgtgtagaaccgagcctagaagcggcttttgtagatttt
ggagcagaacggcacggattccttcctcttaaagagatatctaaagaatatttcaagaaa
tcgtcctcaagagaaggccgaattaacatcaaagatgttatcgctgaaggccaagaagtc
attgtacaagtagacaaagaagagcgtggcaacaagggcgctgcactaacaacctttgta
agcctagccggtcgttacttagttttaatgcctaacaaccctagagcgggcggcatttct
cggcgcatagaaggtgaagacagaaaccagctaagagaagccattgcaggcctcgagatc
ccaaaacaaatgggcgcaatagtgcgcaccgcgggtgttggtagaaatacagaagaatta
caatgggacttagactacctgcaccaattctgggagtctattacccatgcagccgagagc
cgaaaagccccatttcttatttatcaagaaagcaacgtaatcatacgtgctatacgtgat
tatctgcgtcaggatatcggcgaagtactcgttgactcacctgaagtttacgaagatgtt
gtaaactttgtgcagtctgtaatgccagcctatgaaaacaaaattaagctttatgaagat
gacatacctctatttagccgttatcagatcgaagctcaaattgagaccgcatttcagcgt
gaagtgaagctcccttctggtggctcgattgtaattgatccaactgaggcattagtatca
attgatattaactctgcccgcgcaacaaagggtagcgatattgaggaaaccgcactcaat
actaaccttgaagccgctgacgaaattgctagacaacttcgcttgcgtgatatgggtggt
ctaatcgttattgactttatcgatatgagccctgttcgcaatcagcgcgaagtagaatca
agaatgagacaggcgcttgagcttgaccgcgctcgcgtacaagtcggcaagatctcaaga
ttcggccttcttgaaatgtcacgccaaagactacgtccgtctctcggtgaaacacgtaat
gaagtttgtccacgttgtagtggtcagggttctatcagaagcatcgattctatggcccta
tctatcatgcgcttaatgtatgaagagtcatcaaaagagaaaacaactgaagtgcgggcc
cttctcccaatctctgttgcaacattcctcctgaatgaaaagcgcgctcaaatagcagaa
atcgagaaaaaccaaggtgtaacaattgttatcgttcctaccgagaccatggaaacgcct
cattacgaagttttaagaatgcgtgatgatgaatccatcgatgacacggtcagctacgag
ctaaaatctgaagcaccagaacaccaaccaacggcaacgcctactgttaagcaagcagtt
agagaagaagcagcagttaaaacattgaagccaagcgctccaacacctgcaccaacctct
gaagaaataggcttacttaaaaagctatctcaaaaaatagcgtctttatttggtggtaat
gccgaagaagaaaagaaagcagaagttaagcctgagccaagaacacgccaacaaacatct
cgtaatacacagcgtaaccgtcctgaacgaggtggaaagccttcaaatagaggtggccgc
caaaagcaaactcgaaatgatgcacctgctaaactagccagaaatacatcacaagagaca
acgcctcagtcaaaaaacactaatgctgctacgccctctacagatgaaaatcgtagacct
agacgcaatagaaatagtaagccaacagatcagcgtaaccgcccaaacaagagcggtgac
aacagatctaatgagcgcaacacatcaaaccgttcgacaggagccgctgataaacagaat
gcaacagcagcacccgagccggttaagatgcaagaaacagcaatgaagccgcaacaacaa
acagattcagccgttgcaagtgctcctcagacaagccagccatctcaagaaagcaaggca
aaccaagagaagccagcagaaagaaagcgcacaccaagacgcgcgccgtctaacagaaga
gctgagaataacgaaaactctcaatcacacactaatagcgagactaaagcaccaggcgct
aaagtcagtgacccagcacaagaaacacaagaaagcaagccagttaatgcaggacgccct
agcgcgcctaaaacaactgaatcagctgcaagtgcacctgctaaagcaatcgaagaaaaa
tcaaccactgcaacagcgtcacctaagccagctaaggctgataaaaaggacgagtctgta
gtcaagcctgaggctcctaaggttgtaacggccaaggttgaagcgcccaaagcggaagcg
cctaaagcggaagcgcctaaagcggaagcgcctaaagcggaagcgcctaaagctgaagcg
cctaaagctgaagtgtctaaagcggaagcacctaaagcggaagcaaagcctactgaatca
caatctaacgaaggcgaagctagcaacaagccagctcaaccccgtcgaaagcgtggatca
agggcggcaaatgacccgcgcttaagaagaaaacaagaatcagcatcagcaaacacctca
cctgaagcctctgctaatacagattcaccttcagagaaaacagactcttaa
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