Alkalimarinus alittae: NKI27_14190
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Entry
NKI27_14190 CDS
T08567
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
alkm
Alkalimarinus alittae
Pathway
alkm02020
Two-component system
alkm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alkm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NKI27_14190
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NKI27_14190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alkm03021
]
NKI27_14190
Transcription machinery [BR:
alkm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NKI27_14190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
UZE95206
LinkDB
All DBs
Position
3130517..3132043
Genome browser
AA seq
508 aa
AA seq
DB search
MKASLQLKLGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLEVSDDDRNSSEST
DSNAESDSNTQSTSEDLTATATETPAEQGSEDIMNSEDWSDSIPNDLPVDTAWDDIYPNN
APSGPAPEEDSDFESRNSVGESLQDHLLWQLNLTPMSDVDKLIGMSIIDSINTDGYLSST
LEEILSGFTESYQDEIDAHEVELDEIQAVLKRIQHFDPPGVASRDLQECLLIQLNQLPSE
TPWLPQAKLVINHYLNLLGNRDYAQLIRRSRIKESDLKLVIKLIQSLNPRPGEEISGDTP
EYVIPDVVVKKVNDRWKVELNPEIAPKIRVNSGYASLVKRADSSADNTYLKDQLQEAKWF
IKSLQSRNETLLKVSSKIVEHQQGFLDHGEEAMKPLILHDIAEAVEMHESTISRVTTQKY
MHTPRGIFELKYFFSSHVSTASGGECSSTAIRAIIKKLVAAESAKKPLSDSKIATILDEQ
GIKVARRTIAKYREAMSIPPSNERKRLI
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcatcacttcagctaaagcttggccaacagctgacgatgacccctcaactgcaa
caggcaatacgcctactgcagctttctactctagaccttcaacaggagattcaagaagcc
cttgagtcaaaccctatgttggaagtttctgatgacgatagaaacagctcagaaagcacc
gactctaacgccgaatcagattcaaatacacagagtacttcagaagatttgaccgccact
gcaacagagacgcctgctgagcaaggttccgaagatattatgaactcggaggactggtca
gatagcatacctaatgacttgcccgtcgatacagcttgggacgatatataccctaacaac
gcgccttcgggtcctgcgccagaagaagatagtgactttgagtctcgaaacagcgtaggc
gaatcattgcaagaccatctgctatggcaacttaacctaacgccaatgtctgatgtcgac
aagttaataggcatgtcaatcattgactctattaacactgacggctacctctccagtacg
ctagaagaaatattatcgggctttaccgaatcgtatcaagatgaaatagacgcgcacgaa
gtagagctggatgaaatacaagctgttctcaagcgcatacagcattttgacccgcccggg
gttgccagtagagatcttcaagaatgcttgctgatacaactcaatcaactgcccagcgaa
acgccttggcttcctcaggcaaagctagttattaaccactaccttaacttactaggtaat
cgagactacgctcaactcataagacgtagccgtattaaagaatccgacttaaagctggtc
ataaaacttattcagtcactcaaccctcgtcccggtgaagagatcagtggcgacacccct
gaatatgttatacctgatgtggtcgttaaaaaagtcaatgaccggtggaaggttgagctt
aaccctgagatagcgccaaagatacgcgtcaactcaggttatgcatctctcgttaagcgt
gcagatagcagtgctgacaacacctatttaaaagatcagttgcaagaagccaagtggttt
atcaaaagcttacaaagtcgtaatgagactcttctgaaggtttcgagtaagatcgttgaa
caccagcaaggctttttagatcacggtgaagaagcgatgaaaccgttgattttgcatgac
attgctgaagcggttgaaatgcatgaatcgactatttcgagagtaacaacacaaaaatac
atgcatacacctagaggcatatttgagcttaaatacttcttttctagtcatgtaagcacc
gcttcgggtggagaatgctcatcaaccgcaattagagcgatcattaaaaagctagtcgca
gccgagtcagcgaaaaagccattaagtgatagcaaaattgcgactattcttgacgaacaa
ggcataaaagtagctaggcgaaccattgcaaaataccgtgaggcaatgtcaattccgcca
tcgaatgaacgtaaacgactcatatag
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