Alkalimarinus alittae: NKI27_14980
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Entry
NKI27_14980 CDS
T08567
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alkm
Alkalimarinus alittae
Pathway
alkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NKI27_14980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkm03019
]
NKI27_14980
Enzymes [BR:
alkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NKI27_14980
Messenger RNA biogenesis [BR:
alkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NKI27_14980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UZE95358
UniProt:
A0ABY6MZT5
LinkDB
All DBs
Position
complement(3317748..3319001)
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AA seq
417 aa
AA seq
DB search
MNFLSLGLNKKLVAAVSSLGYSEPTPIQVEAIPAILNHQDIMARAQTGTGKTAAFALPIL
HQLGENNAELNTQVISYRPIRALVLTPTRELAQQVHSSFENYGQNTSLQACIAYGGVSLN
PQIKALKQGADILVATPGRLLDLMFKGMIKLDQLQVLVFDEADRMLDMGFSDEINRILKH
VPSNRQTLLFSATFDQAIFDLSKTLLQSPTLIEVDSRNTAAQQVEQVVYAVDADRKRELV
SHLIGSKNWHQVLIFTRTKQGADELVREMCKDGIKTQSIHGDKSQGARERALEEFKQGKT
RALVATDVAARGLDIEQLKFVINYELPYIPEDYIHRVGRTGRAGSSGLAISLLSPDENWL
LEEIEAILDARLPQQWLPGYEPDLTKEVTVSRKNTRTAQKRRAKDRAFGKKTSNRRR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcttgtctttaggtttaaataaaaaattggtcgcggccgtatcatcacttggc
tacagcgagccgactcctattcaggtcgaagcgattcccgctattttaaaccaccaagat
atcatggcgagggcccagacggggactggcaaaacagccgcatttgccttacctattctt
catcagttaggcgagaataacgctgaactcaatactcaagttatctcttatcgtcctatc
cgtgcattggttttgacaccgacgcgagagctcgcgcagcaggttcatagcagttttgaa
aactatggtcagaacacatcattgcaagcttgcattgcttatggaggagtgagtttaaac
ccgcaaattaaggcgcttaaacagggcgctgatatactggtggcgacgcctggccgatta
cttgacctgatgtttaaggggatgattaaactagaccagttgcaggtattggtgttcgat
gaagctgaccgtatgttagatatggggtttagtgatgaaattaaccgtatcctgaagcat
gtgccgtctaatcgacaaacattgctcttttcggccacgtttgaccaagccatttttgat
cttagtaaaacgcttttacagtcgcctacgttaattgaagtcgatagtcgtaatacggct
gcgcaacaggtcgagcaagttgtttatgccgttgatgcagaccgaaagcgcgagctggta
tcacacctgattggttcaaaaaattggcatcaggtactgatatttactcggacaaagcaa
ggtgcagacgagctagttcgagaaatgtgcaaagatggcattaagacgcaatcaatccat
ggtgacaaatcccaaggtgcgcgtgagcgagcgctagaagaatttaagcaagggaaaacc
cgagcactggtggcaacagatgtagccgcaagaggactggatattgagcagctaaagttt
gtgattaattatgagttgccgtatatacctgaagactatattcaccgggtagggcgtacc
ggtagggcggggtcgtcaggtttggcaatctcattgttaagcccagatgaaaactggctg
ctagaagaaattgaagccattttagatgcacgtttgccgcagcaatggttaccaggctac
gagccagatttaactaaggaagtgacggtctcgcgcaaaaacactcgcacagctcaaaag
cgtcgcgccaaagacagagcatttgggaaaaagacatctaatcgacgacgttaa
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