Xiashengella succiniciproducens: M9189_04260
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Entry
M9189_04260 CDS
T08178
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alkq
Xiashengella succiniciproducens
Pathway
alkq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9189_04260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkq03019
]
M9189_04260
03009 Ribosome biogenesis [BR:
alkq03009
]
M9189_04260
Enzymes [BR:
alkq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M9189_04260
Messenger RNA biogenesis [BR:
alkq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9189_04260
Ribosome biogenesis [BR:
alkq03009
]
Prokaryotic type
rRNA helicases
M9189_04260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Multi_ubiq
Motif
Other DBs
NCBI-ProteinID:
URW80562
UniProt:
A0A9J6ZRT2
LinkDB
All DBs
Position
complement(999219..1000895)
Genome browser
AA seq
558 aa
AA seq
DB search
MQTFIESGLRPELLESIEKIGFVMPTPIQAQTIPFILNSDNDLVAMAQTGTGKTAAFGLP
VLHKMDQSTRGIQAIILCPTRELCLQITSDLKSFATGLPYSIVPVYGGAPIFSQIAAIQR
RCDIVVGTPGRVNDMIRRNKLDLSSIRFLVLDEADEMLKMGFKEDMDAIMAETPEEKQTL
LFSATMPPDIARMAGKHMHSPKTISVSRQDISNKDIDHEFVVTAPQNSYEALRRIADINP
DIYGIVFCRTRQETKDIADKLMSDGYNADALHGDLSQSQRDYVMGRFRNKSLQILVATDV
AARGLDVDNLTHVIHYHLPDDSENYIHRSGRTGRAGRKGVSIAILAPSETRRLSMLEKQT
GRKIVKRDIPSGEQVFELRLRNYLSELAATGKAQFDLEKYSEVISETLNGMSREELIEKL
IARQFNSLHEVYSGAQDLNKGEERRSRSERNSDRSGDRSSDRNAGRRTKFGRYIINLGAR
NNIRPEQIISLINKQTPNQKISIGKIDIQGKVSVFEADSSHESQLIKGFKKARFNGMAVT
VVPMDQSPVYSGRRSRTR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacttttattgaaagcgggcttaggcctgaactgctcgaatcgatcgaaaagatt
ggctttgttatgcccacaccgattcaggctcaaaccattccttttattcttaattccgac
aatgatctggtagccatggctcagacaggtacaggaaaaactgctgccttcggactcccg
gttctccataagatggatcaaagtacaagaggtattcaggcaataatcctttgtccaaca
agggagctctgtcttcaaattacttctgaccttaagtcattcgccacagggctgccatat
tctatagtaccagtgtacggtggtgctccaattttctcacagatagctgctatccagaga
aggtgcgatatagttgtcggtactcccggtcgtgtcaacgacatgatccgcagaaacaaa
cttgacctttcttcaatccgcttcctcgtacttgacgaagcagacgaaatgctcaagatg
ggtttcaaggaagatatggacgccattatggctgaaactcctgaggaaaaacaaacacta
ttattttcggctacaatgccaccggacatagctcgtatggcaggcaagcacatgcatagt
cccaagactatctctgtaagccgtcaggatatatcaaacaaagatatagaccacgaattt
gtggttactgctccgcaaaacagctacgaggctctccgcaggattgcagatatcaaccct
gatatttacggtatagtgttttgcagaaccagacaggaaactaaggatatagccgacaag
ctgatgagcgacggctacaacgccgacgctcttcatggagatctttctcagtcacaacga
gactacgtgatgggtcgtttcaggaataagtctcttcagattcttgtagctactgacgtg
gcagcccgaggtcttgacgttgacaacctgactcacgtgatccactatcacctgcctgat
gattcagaaaactacatccaccgcagtggccgtacaggtcgtgccggccgtaagggagta
tcaattgcaatccttgcaccttctgaaaccagaaggcttagcatgcttgaaaagcaaaca
ggcaggaagattgtcaagagagatattccttcaggagaacaggtttttgaactgagactt
agaaactatctcagcgaacttgcagctacaggaaaggcacaattcgacctcgagaagtat
tctgaagtgattagtgaaaccctcaacggcatgtcacgcgaggagctaatcgaaaaactg
attgctaggcagttcaactcccttcatgaagtgtactcaggtgcacaggaccttaacaag
ggtgaagaaagacgttcaagatctgaaagaaacagcgacagaagcggagacagatcaagt
gacagaaatgctggaagacgtaccaagtttggccgctacatcatcaacctcggtgcacgc
aacaatatccgtcccgagcagatcatcagccttatcaacaagcagacaccaaaccagaag
atcagtattggcaagatcgatattcaaggaaaggtatcggtctttgaggccgacagctca
cacgaaagtcaactgatcaagggattcaaaaaggcccgttttaatggaatggctgttacc
gtggttcccatggatcaatctcccgtgtatagtggccgcagatcaagaaccagataa
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