Xiashengella succiniciproducens: M9189_08250
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Entry
M9189_08250 CDS
T08178
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alkq
Xiashengella succiniciproducens
Pathway
alkq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9189_08250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkq03019
]
M9189_08250
Enzymes [BR:
alkq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M9189_08250
Messenger RNA biogenesis [BR:
alkq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9189_08250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
URW78846
UniProt:
A0A9J6ZMU6
LinkDB
All DBs
Position
complement(1943582..1944814)
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AA seq
410 aa
AA seq
DB search
MKFDKYGLIPALRDNLERLGFKRPTDIQYKAISPILKGEDVLAIAQTGTGKTAAFAIPVI
QIMSTRPHLPEPGSMRCLVMVPTHELAIQIANVFKELATGTGLKVIGLYGGVEQDPQIAH
LKNGVDVLVATPGRMFDLAAQKHLNFKSVQILILDEADHMLEKGFYNDMQDLVRRIPRRR
QTLFFSATIDKTIKDLAYSLVNKPVRIQISPKDPVSKNVDHSLMYVEMDDKRFFLERIIR
EHPESKILVFVRTKVRAERVVKAMERVGLKAESIHGDLAQKDRAKVMDRFRSGENKVLIA
TDVSARGIDIPNVEYVVNYDLPDDPENYVHRVGRTGRGTNRGIAVSFCGREEKEKLEEIE
SYLDNPIKVLELDPTDYEATIDFSKDAKYDWKSVVNELIDFEEKPKKKKK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgataagtacggacttattcccgcattacgggataatcttgagaggttagga
ttcaaacgccccacagatattcaatacaaagcaatatctccgattttgaaaggagaggat
gtgcttgccatcgcccagacgggcaccggaaagactgcagcatttgctataccggttatc
cagataatgtcaaccaggcctcatttgcctgaaccaggcagtatgcgctgcctggtaatg
gtgccgactcacgaattagcaattcagattgccaatgtcttcaaagagctggcaacagga
accggacttaaggttatcggtttgtacgggggtgtggaacaggatccgcagattgcacac
ctcaaaaatggggttgatgtacttgtagcaacacccggtcgtatgtttgaccttgctgca
cagaagcacctcaactttaagtcagttcagatccttatcctggatgaagctgaccatatg
cttgagaagggtttttataacgatatgcaggatcttgtcaggcgcattccaaggaggcgc
cagactttgtttttctctgccacaatcgacaagaccatcaaggatcttgcatacagcctt
gtaaataaacccgtccgcattcagatatctcccaaagacccggtttccaaaaatgtcgat
cactccctgatgtatgttgagatggacgacaaacgcttttttcttgaacgtatcataaga
gagcaccctgagagtaagatacttgtatttgtgcggaccaaggttcgtgccgaaagggtt
gtgaaggcaatggaaagggtaggcctaaaggcagagtctatacatggtgatctggctcag
aaagaccgggccaaggtaatggatcgttttcgctcgggcgaaaacaaggttctcattgcc
actgacgttagtgccaggggcattgatattccaaatgttgaatatgtagtcaactatgac
cttccggatgatcctgagaactatgttcaccgtgtgggacgaacaggtcgcggtactaac
cgaggtattgctgtctcattctgtggcagggaggaaaaggaaaaacttgaagagatagaa
tcatatcttgacaatccaataaaggtactggagctggatccgacagattatgaggcaacc
atagacttttcaaaggatgctaagtacgactggaaatctgttgttaacgaacttattgac
ttcgaggaaaaacccaaaaagaaaaagaaataa
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