Xiashengella succiniciproducens: M9189_08440
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Entry
M9189_08440 CDS
T08178
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alkq
Xiashengella succiniciproducens
Pathway
alkq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9189_08440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alkq03019
]
M9189_08440
03400 DNA repair and recombination proteins [BR:
alkq03400
]
M9189_08440
Enzymes [BR:
alkq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M9189_08440
Messenger RNA biogenesis [BR:
alkq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9189_08440
DNA repair and recombination proteins [BR:
alkq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M9189_08440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SWI2_SNF2
HEM4
NADH_4Fe-4S
Motif
Other DBs
NCBI-ProteinID:
URW78884
UniProt:
A0A9J6ZM01
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All DBs
Position
complement(1994240..1996159)
Genome browser
AA seq
639 aa
AA seq
DB search
MSTIQQSLRDYFGYDTFRPGQEQAVNILLEGRSAAAIFPTGSGKSLIYQLAALHLPHLTL
VVSPLLALISDQLEAMERYGIPAARIDSTLDHRETVKIREKVVKGEIKVLMVSVERFKNE
NFRNFLSGVSVSLLVVDEAHCISEWGHNFRPDYLKLPHYRKEFRIPQVLLLTATATPQVI
EDMCGRFEIHRKDVVITGFYRPNLHLDVAPVAQADKGEKLVEILEKAGSESAIVYVTLQK
TAEDVAAFLRSRGITAAAYHAGMNKADRELIQNAFMFGQIPVIVATIAFGMGIDKPDIRY
LIHYDLPKSLESYSQEIGRAGRDGHPSQCILLGNTNAVNILENFVYGDTPERPAVRALIA
EIASAGKRWEMSILKLSNTFNIRQLPLKTLLVYLEMEDFLRPLYSYYASYRFRFLTDSGQ
ILEKFDGERREFLKAVFDLSKKARLWVTVDFEAILAQYPADRSRVVAALDYLSSQGYIEL
EVSDLIEVYEVNSEVAAPDALATLIYSRFEAREGVEMQRLKNMVAFFEGDRCLSKALSEY
FGETTDWESCGHCSVCLDGSRKLVNDLHLEPLTPGIVKDKLQELLVSHGDAGFSPQSLAR
FLCGIYTPLFGKLRLSSVPGFGALENYRYDEVLRLCTSL
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaatacagcaaagcctcagagattattttgggtatgatactttcagaccaggt
caggagcaggctgtcaacatcctgcttgaaggccgatcagctgcagcaatctttcctaca
ggttccggaaaatctcttatttaccagctggcggctttgcatcttccacatcttacacta
gtggtatccccactacttgcactaattagtgaccagctggaagcaatggaacggtatggc
attccagccgccagaattgactctacccttgatcacagggaaactgtaaaaattcgtgag
aaggttgtgaagggtgagataaaggtgctgatggtttccgtagagagatttaagaatgaa
aattttaggaattttctgtccggtgtcagcgtctccctgcttgtggtggacgaagcccac
tgtatctccgagtgggggcataatttcagacccgactacctaaagctgcctcactacaga
aaggaattcagaataccacaggtcttactgcttacagcaacagctacaccccaggttatt
gaggatatgtgcggtcgctttgagatacaccggaaagatgttgtaataaccggtttttac
aggccaaacctgcatctggatgtagctcccgttgcccaggcagacaagggcgagaagctg
gtcgagatcctggaaaaagccggtagtgaatcagccatagtatatgtgaccctgcaaaag
actgctgaagatgttgcagccttcctgcgtagcagagggataacggcagctgcctatcat
gcgggtatgaacaaggcagatcgtgaacttattcagaatgcctttatgtttggccagatc
cctgtgattgttgctacgatagcctttggaatgggtatagataaacctgatatccgttat
ctgattcattacgacctgcccaaatctcttgagagttacagtcaggaaataggtcgcgca
ggccgtgacggacatccttcacagtgcatattacttggtaatacaaatgctgttaatatc
cttgaaaacttcgtgtatggcgatacccccgagcgccctgcagtaagggcgctcatagct
gagatagcttctgccggcaaaagatgggagatgagcatactaaagctttccaataccttt
aatattcgtcagcttcctctaaagactcttcttgtttatcttgagatggaggacttcctg
aggccactatacagttattatgcctcgtaccgctttcgtttcctgactgacagtgggcag
atcctggagaaatttgatggcgaacgtcgtgagtttctgaaggctgtctttgatctgtcg
aaaaaagcaagactatgggttactgttgattttgaagctatattggcacagtaccctgct
gatcgtagcagggtagttgctgccctggactacctgagtagccagggctatatcgaactg
gaagtttctgacctaatcgaggtttatgaggttaacagtgaagtagctgcaccggatgca
cttgccacccttatttattcgcgctttgaggccagggaaggggttgagatgcaaaggcta
aagaatatggttgcattctttgagggagacagatgtctgtcaaaagctctttctgaatac
tttggagagaccacagattgggaaagctgcggccattgttctgtttgccttgacggatca
agaaagcttgtcaatgaccttcatctggagcctctgactccgggtattgtaaaagataaa
ctacaggaattgcttgtaagccatggtgatgcgggtttttcaccgcagagtcttgcacgt
ttcctttgtggaatctacacacctctgtttggtaagctcagattgtcttcagtgccgggt
tttggtgcacttgaaaactaccgttatgatgaggtactgaggctttgtacctctctttag
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