Xiashengella succiniciproducens: M9189_09225
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Entry
M9189_09225 CDS
T08178
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
alkq
Xiashengella succiniciproducens
Pathway
alkq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alkq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9189_09225 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alkq03021
]
M9189_09225 (rho)
03019 Messenger RNA biogenesis [BR:
alkq03019
]
M9189_09225 (rho)
Transcription machinery [BR:
alkq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M9189_09225 (rho)
Messenger RNA biogenesis [BR:
alkq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M9189_09225 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
Mor
AAA_22
Motif
Other DBs
NCBI-ProteinID:
URW79034
UniProt:
A0A9J6ZMD5
LinkDB
All DBs
Position
complement(2213089..2214921)
Genome browser
AA seq
610 aa
AA seq
DB search
MYDILELNKKLLVELRTIAKDLGIKRVESFRKQELIYQILDIQAIQASERTVKEPKSPDN
NRESHGRRGRPPRTDRDNRPESSRPDNNNKPDNRQVSSEPKAAEKPAVVPETTETKNAPE
APVQQQRQPHHRQAPVVNQTSATDQAEVAKTEVPAEQEKQNRPAHRNDDNRRWQKGERHG
DRQSNPQNNPQASNQQTTQQSNQPGSQQPTNGGGQYKQNQEKADRNRGNRRDDKAFEFEG
IISASGVLEIMPDGYGFLRSSDYNYLNSPDDIYVSQSQIKLFGLKTGDTVLGTIRPPKEG
EKYFPLIKVESINGRSPEFVRDRIPFDHLTPVFPDQKFNITSGPRANLSTRVVDMFAPIG
KGQRGLIVAQPKTGKTVLLKDIANAIASNHPEVYMMILLIDERPEEVTDMARSVNAEVIS
STFDEPAERHVRVANIVLEKAKRMVECGHDVVILLDSITRLARAYNTVSPASGKVLSGGV
DANALHKPKRFFGAARNIENGGSLTILATALTETGSKMDDVIFEEFKGTGNMELQLDRKL
SNKRIYPAVDIMASSTRREDLLLDKEVLNRIWILRNYLSDMNSVEAMEFLRDRLVKTSSN
EEFLISMNSQ
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacattcttgaactaaacaagaaattgctggtcgaattacgtaccatagcaaag
gatttaggtattaaaagagttgaatcttttagaaaacaggaactgatatatcagattctt
gatattcaggcgattcaagcctcagaaagaactgtaaaggaaccaaaatcacctgataat
aacagggaaagccatggtcgcagggggaggccaccaagaactgacagggataacaggcct
gaaagtagcagacccgacaataacaacaaacctgacaacagacaggtaagttctgaaccc
aaggccgctgagaagcccgcagttgtgcctgagactactgaaacaaagaatgcgcctgaa
gctcctgtacaacaacaaagacaaccccatcatcgtcaggcacctgtagttaaccagact
tcagcaactgatcaggcagaggtggctaaaactgaagttcctgctgaacaggaaaagcaa
aacagacctgctcatagaaatgatgacaatcgcagatggcagaagggtgaaaggcatggg
gacaggcagagcaatccgcaaaacaatccgcaggcaagtaaccaacagactactcaacaa
agcaaccagccaggcagtcaacagcctactaatggtggtggacagtacaagcaaaaccag
gaaaaggctgatcgcaacaggggcaaccgtagagatgacaaggctttcgaatttgaaggt
attatatctgcatcaggtgttcttgaaattatgccagatggctatgggttcttacgttca
tctgattataactatctcaattctcccgacgatatctacgtttcccagtcacaaattaaa
ctcttcggattaaagaccggtgatacagtgttgggtactatcagacctcccaaggaagga
gagaagtatttcccacttatcaaggttgagtctataaatggacgttctcctgaatttgta
cgcgaccgtattccatttgatcaccttacacctgtattcccagatcagaaattcaatatt
acttctggtccaagggcaaacctctctacaagggtcgttgatatgtttgctccgattggt
aagggccagcgcggtttgatcgtggcacagcccaagacaggtaagacagttctcctcaag
gatattgcaaatgcaatagcatccaaccatcccgaggtttacatgatgattctacttatc
gacgagcgccctgaagaagttactgatatggccagaagtgtaaatgctgaggttatctct
tcaacattcgacgaaccggcagagcgccatgtaagggtagccaatatcgtactcgagaag
gccaagcgtatggttgaatgtgggcatgatgtagtgatcctgctcgactcaattactcgt
cttgcaagagcctacaatactgtatctcctgcgtcaggaaaggtgctttccggtggtgta
gatgccaacgccctgcacaaacccaagcgtttcttcggagctgcccgtaatatcgaaaat
ggcggttcacttaccatcctggccaccgctcttacagagactggttccaagatggatgat
gtgatcttcgaagagttcaagggtacaggaaatatggagctgcagcttgacaggaagctg
tccaacaagcgtatctatcctgctgttgatattatggcttcaagtacacgtcgtgaagac
ctgctgcttgacaaggaagtactcaaccgcatctggattttgcgtaactacctgtcagat
atgaattcagttgaagctatggaattcctcagggatagacttgtaaagaccagttctaac
gaagagttccttatctcaatgaattctcagtaa
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