Algoriphagus sanaruensis: AO498_10945
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Entry
AO498_10945 CDS
T04334
Name
(GenBank) DEAD/DEAH box helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
alm
Algoriphagus sanaruensis
Brite
KEGG Orthology (KO) [BR:
alm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alm03019
]
AO498_10945
Enzymes [BR:
alm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AO498_10945
Messenger RNA biogenesis [BR:
alm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AO498_10945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_19
AAA_22
AAA_30
nSTAND3
Flavi_DEAD
Helicase_RecD
MeaB
Motif
Other DBs
NCBI-ProteinID:
AMQ56948
UniProt:
A0A142EP93
LinkDB
All DBs
Position
complement(2500165..2502651)
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AA seq
828 aa
AA seq
DB search
MSEFNPFSFDLPVAEIIPEVKSHLSNSNSLIITAPPGAGKSTLLPLALLEEVWLAGKKVI
MLEPRRLATKSIAERMASMLGEKVGQTVGYRIRFESAISDKTRLEVITEGILTRMMHQDN
ALEGVGMIIFDEFHERNLFSEVALALAREIQQVLRPDLRILLMSATIDAEELSGLLRAKI
IQSQGRQFPVEINYLKEVDEFAIGEDTARQLIPLAKAHSGDFLVFLPGQGEIKKAEEILR
KALPGDQIVPLFGQLSPSEQQKAILPNPLGKRKIVLSTDIAETSLTIEGIKVVVDSGFAK
SNRFDSRSGLAKLVLHRISKDSADQRSGRAGRLTSGHSYRLWSKATHAQLADYRTPELME
ADLTGLVLDMKAWGKEDIRSMTWLTPPPTSSLVHSEKVLEAIDALEDGKLTPHGKEIHQV
PVHPRIAHMLIFAKKMKQLALATDIAALVEERDPLSPDAGVDINLRIDALRRFRDRGVSM
SRIKKIEKVAAQYRRMFEIGPENSPADPWATGLLLAYAYPERIAAARPGNNAQFQLSNGK
IAQISYKDDLAHESWLAVAHVDAREGMGKIWLAAPLNPKDLAPMVKTKEVLTWDRKKGGL
IAQSEVRIGAIILGTRPLTQFSPSAAKEAILEALKEEGQFLLDWNEDVWQLLNRIESLRI
WNKDATWPVWTQEKLLETVENWIEPYIVQVTKNEDFKKLNLVEILKHQLTFEQQQTLDEL
APSKLSVPSGSLIPITYKPEGANPLLSVRLQELFGLLDTPKVNRGQVPVLIEMLSPGFKP
VQLTQDLKSFWTNGYFEVKKELKRRYPKHEWPDNPLQAEAVRGVKKKT
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaattcaaccctttttcttttgaccttccagttgctgaaatcattcccgaagtc
aaaagccacctctcaaattccaattcactgattatcacagctcctcccggagcaggtaaa
agtacccttcttcccctagctcttttagaggaagtgtggttggctggaaaaaaggtgatt
atgctcgagccccggcgattagccaccaagagtattgcagagcgaatggcttccatgctt
ggagaaaaagtaggacaaactgtaggataccgaatccgatttgaatctgcgatttcggat
aaaacaagactggaagtaattacagaaggtattttgactcggatgatgcatcaggacaat
gcactcgaaggggttggaatgatcattttcgatgaatttcatgagcggaacctattttca
gaggtagcattggcacttgctcgggaaattcaacaggtattaagacctgaccttcggatc
ttgcttatgtctgcaactattgatgcggaggaattgtctggtttgctcagggcgaaaatt
attcaaagtcaaggcaggcaatttcctgttgaaatcaactacctgaaagaagtggatgaa
tttgctattggagaagataccgccagacaattaatcccgcttgccaaagctcattcaggt
gattttctagtttttctccccggtcaaggagaaatcaaaaaagcagaggaaattctccgt
aaagctctcccaggtgatcagatcgtccctttattcgggcaactctcaccctcagagcaa
caaaaggcaatcctgccaaatcctttaggaaaaaggaaaatcgtcctttctactgatatc
gcagaaacatccttaacgatcgaaggaatcaaagtggtggttgattctggatttgcaaaa
tccaatcgatttgactctcgctctggtttggctaaacttgttttacaccgaattagcaaa
gattctgcagatcagcgaagtggtcgagctggccgtttgacttcgggtcattcatatcgg
ctttggagtaaagctacgcatgctcaactcgcagactatcgtactcctgaacttatggag
gcagatttgacaggattagtattggacatgaaggcttggggcaaagaagatatccgatcg
atgacttggcttacaccacctcctaccagttctttggttcattccgagaaggtcctcgaa
gcaattgatgcattggaagatggaaaactcactcctcatggcaaggaaatccaccaagtt
cccgtccatcctcgaattgcccacatgcttatttttgccaagaaaatgaagcagctagct
ttggctacagacattgctgcattggtagaggaacgagatcctctatccccagatgctggg
gtagatatcaatttgcgaattgatgctttgcggagatttcgagatcgaggtgtcagcatg
tctcgaatcaagaaaatcgaaaaagtcgctgcccaatatcgaagaatgtttgaaatcgga
cctgaaaattcacctgctgatccttgggctaccggtttacttttggcttacgcctatcct
gagcgaattgctgctgctcgacctggaaacaatgctcagtttcaactttccaacggaaag
attgctcaaatcagctataaagatgatttggcgcatgaaagctggctggcagtagcacat
gtggatgcacgtgaaggaatggggaaaatttggcttgctgctccgttaaaccccaaggat
ttggcacccatggtcaaaacgaaggaagtgctcacttgggatagaaaaaagggaggactt
atcgcccaatccgaggttcgaattggagccattattcttggcacacgtcccctaactcaa
tttagcccatcggcagcaaaggaagcgattctagaagccttgaaagaagaaggtcagttt
ttattggattggaatgaggatgtttggcagctgttgaaccgaatagaaagtcttagaatc
tggaataaagatgctacttggccagtttggactcaggaaaaattacttgaaacggtagag
aattggatagaaccctacatcgttcaggttaccaaaaatgaagattttaaaaaactgaat
ttggttgaaattctaaagcaccaactcacatttgaacagcaacaaaccttagacgaatta
gcacctagtaaactttcagtgccttctggaagcttgattccaattacctacaaacccgag
ggagccaatccactcctatccgtccgccttcaggagttatttggcttattggatactcca
aaagtgaatcgaggtcaagttcctgttttgatcgaaatgctttcgcctggctttaaacct
gtccaattgactcaggatttaaaaagtttttggaccaatggatattttgaagttaaaaag
gaattgaaacgaagatatcccaaacatgagtggcctgataatccgcttcaagctgaggcg
gtacgaggagttaaaaagaagacttag
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