Algoriphagus sanaruensis: AO498_12140
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Entry
AO498_12140 CDS
T04334
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alm
Algoriphagus sanaruensis
Pathway
alm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AO498_12140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alm03019
]
AO498_12140
03009 Ribosome biogenesis [BR:
alm03009
]
AO498_12140
Enzymes [BR:
alm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AO498_12140
Messenger RNA biogenesis [BR:
alm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AO498_12140
Ribosome biogenesis [BR:
alm03009
]
Prokaryotic type
rRNA helicases
AO498_12140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25_NTPase-like
INTS7_C
Motif
Other DBs
NCBI-ProteinID:
AMQ57188
UniProt:
A0A142EPY3
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All DBs
Position
2764098..2765900
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AA seq
600 aa
AA seq
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MEKTIKFSDLGISEEILQAVEEMGYTQPSPIQAQAIPFVLEGRDVIGQAQTGTGKTAAFA
IPIIDLVDPEFNKPQAIILCPTRELAVQVEGEIQKLAKYHRKISSVAIYGGESIDKQIRV
LKKGVQIVVGTPGRIQDHMDRGTLKLEDAGIIVLDEADEMLDMGFRDDIEAILQEMPEER
QTVFFSATMAKPIMDLTRKYQTDPEIIKVAKNELTVSKIEQVYYEVKPSLKMELMVRLMN
INNYALSVVFCNTKRMTDEVTEALGTRGILAEALHGDLSQAQRDKVMGKFRKGICTVLVA
TDVAARGIDVDNVEAVFNFDIPLDEEYYVHRIGRTGRAGKSGTAITFITGRREFMKLRDL
ERYTKATITKMTPPSVAELVELKKAQLVKDVYRVLSKEEDNQIFESTIAQMISEGLSSEQ
IALGLMKMVMGDAVKELKDQDFGIETAYGDRRRDDRREGGREGRFSDRREGGRDRFGRGE
RGGDRFERGPRSGGDRFEKGSRFSDRKEGGRFGSGPERTRDANMARLFLNLGKKDRIRPN
DIVGAIAGETGVPGKSIGGIDIFDNFSFVDVPQKDAEHVIRVMKNNTIKGKTVNMEISKG
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacaatcaaattctcagacctggggatttcggaagaaatcttgcaggcagtg
gaagaaatgggttatacccaaccttccccaatccaagctcaagccattccatttgtactc
gaaggacgtgatgtcatcggtcaagctcaaactggaaccggaaaaaccgcagctttcgct
attccgatcatcgatttagtagatccggaattcaacaaaccacaggctatcatcctatgt
cctacccgtgaacttgctgttcaggtagaaggtgaaattcaaaagcttgctaaataccac
cgaaaaatcagctctgtagctatttatggtggtgaatctatcgacaaacaaatcagagtc
cttaaaaaaggtgttcaaattgtagtaggaacaccaggccgaattcaagatcacatggat
cgtggtactctaaagcttgaggacgctggaatcatcgttcttgacgaggctgacgaaatg
ctagacatgggcttcagagatgacattgaagcaatccttcaagaaatgcctgaagaaaga
caaaccgtatttttctctgctaccatggccaagccgattatggatttgaccagaaagtat
caaactgatccggaaatcatcaaagtagctaaaaatgaactgaccgtttccaaaatcgag
caggtttactatgaagtaaaaccttctttgaaaatggaattgatggtcagattgatgaac
attaataactatgccttgagtgtggtattctgtaataccaaacgaatgaccgacgaagtt
accgaagcattaggaacaagaggcattcttgctgaagccttgcatggtgatttatcccaa
gctcagagagataaagtaatgggtaaattccgtaaaggtatttgcaccgtattggtggca
actgacgttgctgcaagaggaattgacgtagataatgtagaagcggtgttcaacttcgac
attcctttggacgaagaatattacgtacacagaatcggaagaaccggtcgtgctggaaag
tcaggaactgcaatcacatttatcacaggaagaagagaattcatgaaacttcgtgattta
gagcgatatacaaaagctacaatcaccaaaatgacccctccttccgtagctgaattggtt
gaacttaagaaagcccaattggtaaaagatgtttaccgagttcttagcaaggaagaagac
aatcaaatctttgaatcgactattgctcaaatgatttcagaaggactttcttcagagcag
attgctttaggtttgatgaaaatggtgatgggagatgctgtgaaagaacttaaagatcag
gatttcggaattgaaaccgcttatggtgatcgtcgcagagatgatcgaagagaaggtggc
cgagaaggaagatttagtgatcgcagagaaggcggaagagaccggtttggaagaggtgaa
cgaggtggtgaccgatttgaaagaggaccaagaagtggcggagaccgatttgaaaaagga
agcagattttcagaccgaaaagaaggtggaagattcggaagcggacctgagcgaacaaga
gatgccaacatggctcgtcttttcttgaaccttggtaaaaaagacagaattcgaccaaat
gatattgtgggtgctattgccggtgaaacaggtgttcctggtaaaagcattggaggaatt
gacatttttgataatttctcattcgtagatgttcctcaaaaagacgcagaacatgtaatc
cgtgtaatgaaaaacaataccattaaaggtaaaaccgtcaacatggaaatctctaaaggt
taa
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