Alcanivorax sp. NBRC 101098: AS19_03440
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Entry
AS19_03440 CDS
T03879
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aln
Alcanivorax sp. NBRC 101098
Pathway
aln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS19_03440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aln03019
]
AS19_03440
03016 Transfer RNA biogenesis [BR:
aln03016
]
AS19_03440
Enzymes [BR:
aln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AS19_03440
Messenger RNA biogenesis [BR:
aln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AS19_03440
Transfer RNA biogenesis [BR:
aln03016
]
Prokaryotic type
tRNA degradation factors
AS19_03440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
S1_2
KH_2
OB_RRP5_4th
KH_KhpA-B
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
BAP13195
LinkDB
All DBs
Position
365598..367691
Genome browser
AA seq
697 aa
AA seq
DB search
MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANPGQNFFPLT
VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSS
DKNRDPDIAALIGTSAALSISGIPFSGPIGAARVGYKDGMYILNPSYSELAESALDLVVA
GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTETWDWKPAEQNE
TLKAAIKDKFAAALGEAYTITEKMARYAKVGELRDACVAEFATGEDGAPEADEVKDLFGK
IEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGM
RDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAVVPSVQ
DFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGRYAVL
SDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHILGEMN
KAIAESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTEETGCTIDIEDDGSVKIY
GETREKADEAVRRVEEITAEAEVGAIYEGKVTRVVDFGAFVAIMPGTEGLLHISQIAEER
VEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMKEAKED
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaaattaccaagcaaattcagtttggccgtgacacggtaaccttggaaacc
gggcaaattgctcgccaggcaaccgccgctgtcatggtccgtatcggtgacacccaagtg
ttggtcaccgtagtgggtagaaaagaagccaatccagggcagaacttctttcccctgacc
gttaactatcaggaaaagacctatgcaaccggccgtatacccggtggcttcctcaagcgt
gaaggtcgtcctagcgaaaaagaaacgctgacctgccgactcatcgaccgcccgattcgc
ccgctgttcccaaagggcttcatgaatgaagtgcaggttgtggctacggtgatgtcttcc
gacaaaaaccgcgatccggatattgcagccttgatcggtacgtccgctgccttatctatt
tccggaattccttttagtggcccgattggtgctgcacgggtgggctacaaggatggaatg
tacatcctcaaccctagctattccgagttggctgagtctgcactggacttagttgttgca
ggtaccgaacctgctgtattgatggtggaatccgaagcgcaggagctgtctgaagaccaa
atgctgggcgcggtattgttcggccatatggaaatgcagccgctgatccagggcatcaag
gagttcgctgccgaagtgggcactgaaacgtgggactggaaaccggctgagcagaacgag
accctgaaagcggcgatcaaagataagttcgcggcggcgttgggcgaggcttacaccatt
accgagaagatggcccgttacgccaaagtgggcgagctgcgtgatgcttgtgtggctgag
tttgccaccggtgaagacggtgcgccggaagccgacgaagtgaaagacctgttcggcaag
atcgaaaagagcgtggtgcgtgaagccgtggtatccggcaagccgcgtattgatggtcgt
gctttggatgcggtgcgtgctattgattgccaagtgggcactttggcgaaaactcatggc
tctgcgttattcacccgtggtgagacccaggcgatcgtcactgccacattgggtggtatg
cgcgatgcgcagttcatcgacgcgctggaagggtcccaccaggaccacttcatgctgcag
tacaacttccctccatactgtgtgggtgagacgggcttcatcggctctcccaagcgtcgt
gaaatcggtcacggtcgcctggcccgccgtggtgtggaagccgttgtgcctagcgtgcag
gacttcccttacacgattcgtgtggtctctgagatcactgagtccaacggttcttcttcc
atggcgtccgtgtgtggcacttccatggcgttgatggacgctggtgtgccgttgaccgcg
ccggtggccggtattgccatgggcctggtgaaggaagaagacggccgttatgcagtgctg
tccgatattctgggtgatgaagatcaccttggcgacatggacttcaaggtggctggtacc
gcccgtggtgtgactgctttgcagatggacatcaagatcgaaggcattaccgaagagatc
atggagaaagcgctgaaccaggcaaatgccggtcgtctgcatatcctgggtgagatgaat
aaggcgattgccgagtcgcgctctgaggtatctgacaacgcgccgactctgctgactttg
aagatcaacccggacaagatccgtgatgtgatcggtaaaggcggcgcgactattcgtgcc
ctcaccgaggaaacgggttgtaccattgacattgaagacgatggtagcgtgaagatctac
ggtgaaacccgtgaaaaagccgatgaagcggtccgtcgcgtagaagagattaccgcggaa
gctgaagtgggtgcaatctacgaaggcaaggtaacgcgggttgttgatttcggtgcgttc
gtggcgatcatgcccggcactgaaggcctgctgcacatctcccagatcgctgaagagcgt
gttgagaaagtgactgattacgtgaacgaaggtgagatcattaaggtgaaagtccttgat
gtggaccagcgtggccgtatcaaactgtcgatgaaggaagctaaggaagattaa
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