Alcanivorax sp. NBRC 101098: AS19_03920
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Entry
AS19_03920 CDS
T03879
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aln
Alcanivorax sp. NBRC 101098
Pathway
aln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AS19_03920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aln03021
]
AS19_03920
03400 DNA repair and recombination proteins [BR:
aln03400
]
AS19_03920
Enzymes [BR:
aln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AS19_03920
Transcription machinery [BR:
aln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AS19_03920
DNA repair and recombination proteins [BR:
aln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AS19_03920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BAP13243
UniProt:
A0AAD1AZE3
LinkDB
All DBs
Position
423850..428052
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNLLKSQGQVTEFDKIRIALAPPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPTAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLTDEEYFDAMEEFGDEFEAKM
GAEAVQQLLMELDLVEEIKILREEVESTNSDTKLKKLSKRLKLMEAFKDSGNAPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHECGLPKKMALELFKPFIFAKLEGRGLATTIKAAKKMVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIGPTQDVVLGLYYISRDRVNAQGEGHVFADTKEVMRALGNK
QVHIHARVKVRVHEVVKDLEGNVEERTFIADTTPGRCKLWDIVPAGLGFDMVNQNMTKKA
ISKLLNTCYRILGTKETCIFADQLMYLGFREATLSGSSIGVEDMVIPDAKYTMIDAAEEE
VREIEEQFASGLVTRGERYNKVVDIWARTNDQIAKAMMENLRVEVVKNRDGKDEEQGSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVNQIDCGTEEGLLMTPLIEGGDVVEPLRERVL
GRVVARDVMNPLNQDEVAVEAGTLLDEVWVEQLETMGVDEVLVRSPITCATRWGVCATCY
GRDLARGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVSSIQIKHGGKVR
FHNAKHVQHKDGLVIVSRSADLAVADELGRERERYKLPYGATVTVNEGDEVSGGQVVATW
DPHTHPIIAEVEGKVQFGDMEEGITVNHQTDELTGLTNIEMLSSQNRPSAGKDMRPVIRV
LDSKGKPIVMPNTDMPAQYFLPGGALCGLKDGANIGVGDVIARIPQESSKTRDITGGLPR
VADLFEARNPKEAAILAEKTGTVSFGKETKGKVRLVITPDNSDDNYEELIPKWRQLNVFE
GERVEKGEVVSDGPLNPHDILRLKGESELARYIVNEVQEVYRLQGVKINDKHIETIIRQM
LRKVEILEVGESHFIKGEQAEYARVMEEIDRLKAEDKMLPQYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGYAYHMERRRQRADARGPE
APTMDEVEAALSEALSSSGE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatttgctcaaaagtcagggacaagtcacggagttcgacaagatc
cgcatcgcgcttgcgccgccggatctgatccgctcctggtcttttggcgaagtgaaaaag
cctgagaccattaactaccgcacgttcaagcctgagcgtgatggtctgttttgtgcgcgt
atctttggtccgatcaaagactacgaatgcctgtgcggtaagtacaagcgtttgaagcat
cgtggcgttatctgtgaaaagtgtggcgtagaagtcaccctttccaaggtgcgtcgtgag
cgcatgggccacatcgaactggcaagccctactgcacacatctggttcctgaagtctctg
ccgtcccgtatcggtttgatgctggatatgaccctgcgtgatatagagcgggtcctgtac
ttcgaatctttcgttgtgaccgagccaggcatgacaacgcttgagcgtgggcagctgctt
accgatgaagagtacttcgacgccatggaagaattcggagacgaattcgaagccaagatg
ggtgccgaagctgtacagcaactcctgatggagttggatctggtcgaagagatcaagatc
ctgcgcgaggaagtggagtccacgaactctgataccaagctgaagaagctgtccaaacgc
ctcaagctgatggaagccttcaaggattccggtaacgcgcccgaatggatggttctcacc
gtgctgccggtactgccgccggatctgcgtccgctggtgccgctcgatggtggtcgtttt
gcgacctccgatttgaacgatctgtatcgccgggtaatcaaccgtaacaatcgcctcaag
cggttgctggatctgagcgcgccggacatcatcgtgcggaacgaaaagcgtatgctgcag
gaatctgtagatgcgttgttggacaacggtcgtcgtggccgtgccattaccggttctaac
aagcgtcctttgaagtcccttgccgacatgatcaagggtaagcagggccgcttccgtcag
aacctgttgggtaagcgagtcgattactccggtcgttccgtgatcgtggtaggtccgact
ctcaagctgcacgagtgtggtctgcccaagaaaatggcgctggaactgttcaagccgttt
atctttgccaagctggaagggcgtggtctggcgaccaccattaaggcggccaagaaaatg
gtcgagcgcgaaaccgctgaagtgtgggatatcctcgctgaagttattcgcgaacacccg
gttatgttgaaccgggcgccaacccttcaccgtctcggtattcaggcgtttgagccggtg
ctgattgaaggtaaggccatccagctgcacccgctggtgtgtgcggccttcaacgccgac
ttcgatggtgaccagatggcggtgcacgtaccgctgaccctggaagcgcagcttgaagcc
cgtgcattgatgatgtccaccaacaacattctttcgcccgccaatggtgagccgattatc
ggcccaacccaggacgtggtgctgggtttgtattacatcagccgtgaccgtgtgaatgcg
caaggtgaaggccatgtatttgccgacaccaaggaagtgatgcgtgcgctgggtaacaag
caggtgcacatccacgcccgcgttaaggtgcgtgtgcatgaagtggtgaaagacctggaa
ggtaacgtggaagagcgtacctttatcgccgatactacccctggtcgttgtaagctgtgg
gatatcgtgccggcgggtctgggcttcgacatggtcaaccagaacatgaccaagaaggcc
atctccaagctgttgaacacctgttaccggattcttggcaccaaagagacctgtatcttc
gctgaccaattgatgtacctgggcttccgcgaagcaacgctgtctggttcttccattggt
gtggaagacatggtgattccggatgccaagtacaccatgatcgacgctgccgaagaggaa
gtgcgcgagatcgaggagcaatttgcttccggtctggtgactcgcggtgagcgttacaac
aaggtcgtggatatttgggctcgtaccaatgaccagatcgctaaggcgatgatggaaaac
ctccgtgttgaagtggttaaaaaccgcgacggcaaggacgaagagcagggctctttcaac
tccatcttcatgatggccgattccggggcacggggttccgctgctcagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggatggctccattatcgaaacgcctattacc
agtaacttccgtgaaggtttgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtctggcggatacggcactgaaaacagcgaactccggttacttgactcgtcgtctg
gtggatgtggcgcaggatctggtggtcaaccagatcgactgtggcaccgaagaaggtttg
ctgatgacgccgctgattgaaggtggtgacgtggtagagccgctgcgcgagcgtgtgctc
ggtcgtgtggttgcccgtgacgtgatgaatcctctcaaccaagacgaagtagcggttgaa
gccggtacgttgctggatgaagtttgggttgaacagctggaaaccatgggtgtggacgaa
gtgctggtgcgctcgccgattacctgcgcgactcgttggggcgtgtgtgcgacctgttat
gggcgtgacttggctcgtggccatcaggtcaatgtgggcgaggctgtcggtgttatcgca
gcacagtccattggtgagccgggtacccagctgaccatgcgtaccttccacattggtggg
gcggctagccgagcgtctgcagtatccagcatccagatcaagcacggcggtaaggtgcgt
ttccataacgccaagcacgtgcagcataaggacggtctggtaatcgtttcccgttctgct
gatctggctgttgctgatgagctgggccgtgaacgtgagcgttataagctgccctacggt
gccacggttaccgtgaatgaaggtgatgaggttagtggtggtcaggtcgttgcgacctgg
gatccgcacacacacccgatcattgcggaagtggagggtaaggtgcagttcggtgatatg
gaagaaggtatcactgtaaaccatcagaccgacgagctcaccggcctgaccaacattgaa
atgctcagttcccagaaccgtccttcagcgggtaaggacatgcgtccggttatccgtgtg
ctggacagcaagggcaagcccatcgtgatgcccaatacggatatgccagcccagtacttc
ctgccgggtggtgcactgtgtggcctgaaagatggcgcgaatatcggcgttggtgatgtg
atcgcgcggattccgcaggagtcctctaagactcgcgacatcacaggtggtctgccccgt
gttgctgatttgttcgaagcacggaacccgaaagaagcggcaatcctggctgaaaagact
ggtaccgtatccttcggtaaagaaaccaaaggtaaggttcgccttgttatcactccggat
aatagtgatgacaactacgaagaattgattccgaaatggcgtcagctcaacgtatttgaa
ggtgagcgggttgagaaaggtgaggttgtctctgatggaccgctgaacccgcacgacatc
ctgcgccttaaaggtgagtctgagctggcccgttacatcgttaacgaagtgcaggaggtt
taccgtctgcagggtgtgaagatcaatgataagcacattgaaacgatcatccgccagatg
ttgcgcaaagtagagatcctggaagtgggtgagtctcacttcattaagggtgagcaggca
gaatatgcccgcgttatggaggaaattgatcgcctgaaagccgaagacaagatgctgccg
cagtaccaacgactgctattaggtatcaccaaggcttccctggcgacagagtccttcatc
tctgcggcgtctttccaggaaaccacccgcgttctcaccgaagcggcggtaaccggcaag
gaagacgacttgcgtggcttgaaagaaaacgttgttgtgggtcgtttgatccccgccggt
accggctatgcctatcacatggagcgtcgtcgtcagcgtgcggatgcgcgcgggccagaa
gcgccaaccatggacgaggtagaagctgcgctgtcagaagctcttagctcctcaggcgag
taa
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