Alcanivorax sp. NBRC 101098: AS19_10930
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Entry
AS19_10930 CDS
T03879
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aln
Alcanivorax sp. NBRC 101098
Pathway
aln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AS19_10930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aln03400
]
AS19_10930
Enzymes [BR:
aln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AS19_10930
DNA repair and recombination proteins [BR:
aln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AS19_10930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BAP13944
UniProt:
A0AAD1EYL6
LinkDB
All DBs
Position
complement(1196364..1199843)
Genome browser
AA seq
1159 aa
AA seq
DB search
MKLLPDSNLFPNGREHYKDWAGLNAGSMAAVLAELARSQNHLLVVLAPNSSRAQQLTDSL
SFYLTGSNTPVMLFPDWETLPYDLFSPHQDIISDRIQVLHQLPTTHKGILVVPVNTLMQR
LAPPIHITGNSFLLKVGDRFDMEATRSRLVASGYRQRDNVYEHGEFAVRGAIMDIFPMGA
EQPFRIELFDDEIESLRLFEAESQRSTGKVDNITLLPAAEFPLSAEGIARFRSRFRDTFD
VDTRHVPLYQDVTDGLAAPGLEYYLPLFYEEMATLFDYLPDDVRLVELADTQSAIKHFWQ
DVEQRHESRRHDIHRPILAPWQLFLRPDELNAALKQHPRARQIHNDSSGADQAIHFDVAP
MPSLTADVRANNPLALLHTFSDAHPDTHILICAETAGRREALLELMQKIQIQPAMKDNWP
DFIANSARWNLTQGELDAGFYAPEHALLVVTENDLYGERVLQRRRRKSSSDDGAAEQAFR
SLGEMTVGSPVVHLEHGVGRYLGLTHMEVHRQQHEFLLLEYAGGDKLYVPVSSLHLISRY
GGGDTAPLNRLGTEQWTKARQKAAEKIHDVAAELLNTYARREAREGRQFELDLNDYDRFS
ASFPFEETPDQQAAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAFVAVENQTQVAV
LVPTTLLAQQHYESFTDRFADWPVNIEVLSRFRSAKEKTQVLQRLKEGKVDILVGTHQLL
QETVSFDNLGLIIVDEEHRFGVRHKERLKQMRAECDILTLTATPIPRTLNMAMSGMRDIS
IIATPPQKRLSVKTFVQQHNDTVIKEALLRELLRGGQVYYLHNDIDTMEKTAADIRKLVP
DARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTIIIDRADKLGLA
QLHQLRGRVGRSHHQAYAYLITPSPKVMTKDAIKRLEAIEQATDLGAGFMLASQDMEIRG
AGELLGEEQHGNIETIGFSLYMEMLEQAVDALKRGEQPDVEKPLSGGPELNLRIPALIPE
DYLPDVFGRLTLYKRIAGCKTRAGLKELKVEMIDRFGLLPEPVKNLFAVTELRQQADRLG
IIRLDAHATGGKLEFGERTPVDPLTIVKLVQSGPNRFKLEGANALRFVEDSETPEERIKV
VQELLKRLAAQSIKPDAPA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaagctactccccgacagcaatctctttcccaatgggcgagagcactataaggactgg
gccgggctcaatgccggcagcatggccgcagtgctggccgagctggcgcgtagccaaaac
catttattggtggtgctagcgcccaatagcagccgtgcccagcagctcaccgactcacta
agcttctacctgaccggcagcaacaccccggtgatgctgtttccggactgggaaaccctg
ccctacgatctattcagcccgcatcaggacattatcagcgaccgtattcaggttcttcac
cagctgcccactacccataagggcattctggtggtgccggtaaatacgctaatgcagcga
ttggcgccgccgatacatatcaccggcaacagtttcctgctcaaggtgggtgatcgtttc
gacatggaagctacccgcagccggctagtcgccagtggctaccggcagcgcgacaacgtg
tacgagcacggcgagtttgccgtgcgcggggctatcatggacatttttcccatgggcgcc
gagcaaccgttccgcatcgaactgttcgacgatgaaatcgaatccctgcgcctgttcgaa
gcggaaagccagcgctccaccggcaaagtggacaatatcaccctgctgcccgccgcagag
tttcccctcagtgccgaaggtattgcccgcttccgtagccgcttccgcgatactttcgac
gtggatacccgtcacgtgcccctttatcaggacgtgaccgacggcctagcggcgccgggc
ctggaatattatctacccctgttctatgaggagatggccaccttattcgattacctgccc
gacgatgtacggctggtggaactggccgacacacagagcgccatcaagcacttctggcaa
gatgtggagcagcgccatgaatcccggcgccacgatattcaccgcccgattctggctccc
tggcaattgttcctgcgccctgacgagctcaacgccgcactaaagcaacatccaagagcg
cgccagattcataatgattcaagcggcgcagaccaggccatccactttgacgtggcgcct
atgccttcgctcaccgccgatgtgcgtgccaacaatccattggctttgctgcataccttt
tccgacgcccatcctgatacccatatcctgatttgtgcggaaaccgccgggcgcagggag
gccctgctggagttgatgcagaagattcagatccagccggccatgaaagacaactggccc
gacttcattgccaactcggcacgctggaacctgacccaaggggagctggatgcgggcttc
tacgctccggaacacgccttactcgtggtcaccgaaaatgacctgtatggcgagcgggta
ctgcagcgcaggcgccgtaaatccagcagcgacgacggcgccgccgagcaagcgttccgc
tccttaggcgaaatgaccgtgggctccccggtggtgcatctggagcacggcgtggggcgt
tacttgggcctcactcatatggaagtgcatcgccagcaacacgaatttctgctgctggaa
tacgccggcggcgacaaactctatgtaccggtttcctcgttgcatctgattagccggtac
ggtggcggtgacaccgctcccttgaatcgtttaggcactgaacaatggacgaaggctcgc
cagaaagcggccgaaaaaatccacgatgtagctgccgagctgctcaacacctacgctcgg
cgcgaggccagagaaggccgccagttcgaactggacctgaacgactatgaccgtttcagc
gctagctttcccttcgaggaaaccccggaccaacaggcggctattgcctcagtggttgcc
gacatgcaatcgagccagcccatggatcggctggtatgtggtgacgtgggtttcggcaaa
accgaagttgccatgcgcgccgccttcgtggcggtggaaaaccagacccaggtggcggtg
ctggtgcccaccaccctgcttgcccaacagcactacgagtcattcaccgatcgctttgcc
gactggccggtaaatatcgaagtactgtcccgttttcgcagcgccaaggaaaagacccag
gtgttacagcggcttaaggaaggcaaggtggatattctggtgggcacccatcagctcctg
caagaaaccgtatcgttcgataatctggggctgattattgtcgatgaagagcaccgcttc
ggggtacgccacaaggagcgcctcaagcaaatgcgggccgagtgcgacatcctcaccctc
accgccacgccaattccgcgaaccctgaatatggccatgagcggcatgcgagatatctcc
atcatcgctaccccgccgcagaaacgcctgtcggtgaaaaccttcgtacagcagcacaac
gataccgtcatcaaggaagccttactgcgtgaattattgcgcggcggccaagtgtattac
ctgcacaacgacatcgacaccatggagaaaaccgcagcggacatccgcaaactggtgccc
gatgcccgcgtcggcattgcccacgggcaaatgcgcgagcgggaactggaagcggtgatg
agtgacttttaccaccgccgcttcaatgtgctagtgagcaccactatcatcgaaacgggt
atcgatgtgcccagcgccaataccatcatcatcgaccgggccgacaagcttgggttggcc
cagcttcatcagctgcgcggccgcgtgggccgcagccatcaccaagcctacgcctacctg
atcacccccagtcccaaggtgatgaccaaggatgcgatcaaacgactagaagccattgag
caggccaccgacctgggggccggcttcatgctcgccagccaggacatggaaattcgcggc
gccggcgagctgctcggcgaagaacaacatggcaatatcgagaccatcggtttcagtctc
tatatggaaatgctggaacaagcggtggatgcattgaagcgcggcgaacagccggatgtg
gaaaagcccctaagcggtggcccggaactgaacctgcgcattcccgcactgattcccgaa
gattatctgcccgatgtgttcggcaggctgaccctctacaagcgcatcgctgggtgtaaa
acccgtgccggcctgaaagagctgaaagtggaaatgatcgaccgcttcggcctgctgccc
gaaccggtaaaaaatctgtttgctgtcacagaactacgtcagcaggccgatcgactgggc
attatccgcttggacgcccacgccaccggcggcaagttagagtttggcgaacgcacccct
gtggacccgctcaccatcgtcaaactggtccagtccggccccaaccgtttcaagctggaa
ggtgccaacgccctgcgttttgtggaagacagcgagacacctgaagaacgcattaaagta
gtacaggaactgcttaaacgtctggcagctcaaagcattaagcccgacgctccggcttga
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