Alcanivorax sp. NBRC 101098: AS19_19830
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Entry
AS19_19830 CDS
T03879
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
aln
Alcanivorax sp. NBRC 101098
Pathway
aln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS19_19830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aln03019
]
AS19_19830
Enzymes [BR:
aln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AS19_19830
Messenger RNA biogenesis [BR:
aln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AS19_19830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
Hydrolase
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAP14834
UniProt:
A0AAD1B2T8
LinkDB
All DBs
Position
2191050..2192318
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AA seq
422 aa
AA seq
DB search
MQKDKASSWSLEQFQVPEKEGERRFHDFDLHLDLMHGIADSGFQYCTPIQAEVLEHTLAG
ADAIGRAQTGTGKTAAFLITVINDLLKHPIDVQRFAGEPRALIVAPTRELAMQIEKDANI
LTKYTDLQVMSVVGGMNFNRQQERLQNKLIDILVATPGRLLDFAKRRDLWLDRVEFLVLD
EADRMLDMGFIPDVKRIVGMTPKSQYRQTQLFSATFNDDVMNLSRRWTQDAEIVEIEPTQ
VTTDTVEQKVYITNTDDKFKLLYNLITGMNMDKVIVFANRRDITRRVCDRLQKRGLKVSL
ISGDVPQTQRSKTLERFRAGDLQVLIATDVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIG
RTGRAGASGMSISFACEDDAFLLPELENAIGMKLECEYPPADLLAERERSASAKAPDAEK
KD
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaagacaaagcaagctcctggagcctggagcaatttcaggttccggaaaaagaa
ggcgaacgccgctttcacgactttgatctgcatctggacctgatgcacggcatcgccgat
tcgggcttccagtactgcacgcctattcaggctgaagtcctggaacataccctcgctggc
gccgatgccatcggccgggcccaaacgggtaccggcaagacagccgctttcctgatcact
gtaataaacgatttgctcaaacatcctatcgatgtccaacgctttgccggtgagcctcgc
gccctgatcgtggcccccacccgagaactggccatgcagattgagaaggacgccaacata
ctgaccaagtacaccgaccttcaagtaatgagtgtggtgggcggcatgaacttcaatcgg
caacaggaacggctgcaaaacaaactgattgatatcttagtggccacccccggtcgtctt
ctcgatttcgccaaacgccgcgatctgtggctggaccgggtcgagtttctggtgttggat
gaagctgatcgcatgctggacatgggcttcattcccgacgtgaaacgcattgtcggcatg
acgccgaaaagccagtatcgccaaactcaactgttctctgccacattcaatgacgatgtg
atgaacctctcccgccgctggacgcaagatgctgaaatcgtggagatagagccaacccaa
gtcaccactgataccgtagagcaaaaggtctacatcactaatacagacgacaagttcaag
ctgctctataacctcattaccggcatgaacatggacaaggtcatcgtatttgccaaccgt
cgagacattactcgccgggtgtgcgaccggctacaaaagcgggggcttaaagtctccctg
atttccggcgacgtcccacaaactcaacgaagcaaaacactggagcgcttccgagccggc
gacttgcaagtgcttattgccacggacgtggccggccgcggcatccacattgatggcgtc
tctcacgtagtgaattacaatctgcctgaagatccggaagactatgtgcaccgcattggt
cgtaccggtcgcgctggtgccagcggtatgtcgatcagtttcgcctgtgaagatgacgcc
ttcctgctaccagagctggaaaacgccatcggcatgaaactggaatgcgaataccccccc
gccgacctgctggcggaaagggagaggtcagcctccgcgaaagcgccagacgcagagaaa
aaggactga
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