Alcanivorax sp. NBRC 101098: AS19_25230
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Entry
AS19_25230 CDS
T03879
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aln
Alcanivorax sp. NBRC 101098
Pathway
aln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS19_25230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aln03021
]
AS19_25230
03019 Messenger RNA biogenesis [BR:
aln03019
]
AS19_25230
Transcription machinery [BR:
aln03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AS19_25230
Messenger RNA biogenesis [BR:
aln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AS19_25230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
S1CSD-TOTE-2
DUF3086
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
BAP15374
LinkDB
All DBs
Position
2772287..2773546
Genome browser
AA seq
419 aa
AA seq
DB search
MNLSELKQKPIGELLDIAKELGLENLARTRKQDVIFSILKRAAKNGSDIYGDGVLEILQD
GFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFAMLKVNEIN
FDRPENAKNKILFENLTPLFPTQRLVMEIGNGSTEDITTRVIDLVAPIGKGQRGLIVAPP
KAGKTMLLQSVAQSIARNNPETHMIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVQPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMELHLDRKVAEKRVFPAMNI
RKSGTRREERLVSEDELQKMWILRKVLHPMDEIGAMEFLIDRMKQTKTNLEFFDSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttctgaactgaagcagaagccgattggagaacttctggacattgccaaggaa
ctcggtctcgagaacctggcaagaacccgtaaacaagacgttatcttttccatccttaaa
cgcgccgccaaaaatggctccgacatttacggcgatggcgtgctggaaatcctgcaggat
ggtttcggtttccttcgttccgctgaaggatcttatcttgccggcccggacgacatttac
gtttcgcccagccagatccgtcgcttcaatttacgcaccggcgacaccatcgccggaaaa
atccggcctcccaaggatggcgagcgttacttcgccatgctcaaggtcaacgagatcaac
tttgaccgcccggaaaacgccaagaacaaaatcctgttcgagaacctgaccccgctgttt
cctactcagcgattggtcatggaaatcggtaatggctccaccgaagacattaccactcgg
gtaatcgatctggtggcacccatcggtaaagggcagcgtggcctaatcgtcgcgccgccc
aaagccggtaagaccatgctgctgcagagcgtggcccagtccattgcccgcaacaacccc
gaaactcacatgattgtgctgctcatcgacgagcgcccggaagaagtgacagaaatgtcc
cgaaccgtgcgcggtgaagtggtggcctccacctttgacgagccaccggcccgtcacgtt
caggtggctgaaatggtgatcgagaaagccaagcggctggtcgagcacaaacaggacgtg
gtaatcctgctggactccatcacccgtctggcgcgcgcctacaacaccgtgcagcccagc
tccggcaaggtgctcaccggtggtgttgacgcccacgccctggaaaagcccaagcgcttt
ttcggtgccgcgcggaacatcgaggaaggaggtagcctgaccatcctcgccaccgctctg
gtcgacaccggttccaaaatggacgaagtgatctacgaggaattcaaaggcaccggcaac
atggaactgcatctggaccgcaaggtggcagagaagcgtgtgttcccggccatgaatatc
cgcaaatccggcacccgtcgtgaagaacgtctggtgagcgaagacgaactgcagaagatg
tggatcctgcgcaaggtgctgcaccccatggacgaaattggcgccatggaattcctcatc
gaccgcatgaagcagaccaagacaaacctggaattcttcgattccatgaagcgcaaataa
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