Alloactinosynnema sp. L-07: CRK55481
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Entry
CRK55481 CDS
T04489
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alo
Alloactinosynnema sp. L-07
Pathway
alo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRK55481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alo03019
]
CRK55481
03009 Ribosome biogenesis [BR:
alo03009
]
CRK55481
Enzymes [BR:
alo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CRK55481
Messenger RNA biogenesis [BR:
alo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CRK55481
Ribosome biogenesis [BR:
alo03009
]
Prokaryotic type
rRNA processing factors
CRK55481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
RD3
Motif
Other DBs
NCBI-ProteinID:
CRK55481
UniProt:
A0A0H5CCS5
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All DBs
Position
I:476518..479322
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AA seq
934 aa
AA seq
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MHALAKLLDLSSKDIISALSDLGEEVRGAQSSVSRDVALKVADALIGTPEAAASTPEAPE
VAVPEVSVPEVEAEPEPEPEPVRVRRTPPTPVFASASPLFLPPEPVAAPVKAAPVKPVHR
EEPEDLVEDEVEEPQSAQETPADDDDDSGSRRRRRGRRGRGRGKGAAEDGDTEPKADDES
TEAEEAEAEESDDEPSDAASRRRRRRRRRKGGDEDGDAAATDDPPNTVVHVREARDEKTE
AADARNEVRSVRGSTRLEAKRQRRRDGREAGRRRAPILTESEFLARREAVDRAMIVRENP
DRTQIAVLEDGVLVEHFVTSAGTGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAG
EVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPGGG
ATGISRKLPENERRRLKDVLKRIVPEDAGVIIRTASEGISEEELGRDVRRLQAQWQVIKD
KSDGTNGVKKSGAPSLLYEEPDLLVKVVRDLFTEDFSALAVQGDTAWETIDSYVRHVAPE
LLERVRKHVGLKDVFNEHRVDEQLLKALDRKVWLPSGGYLIIDRTEAMTVIDVNTGKFTG
SGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRD
RTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSTTCEHCKGRGVVVAAEPATKSPPAPQQQP
AAPKEHEQGGGRRRNRDRGKEQPAPAEEAPRDDFARSAVQNIAKATVKVAEHDGHEHDGQ
VVAAGSEAAQFESARPAESTDGQSADSIAPAEAAAVSTPVEVDDSDRFEEFGTERTAPAK
PARSGRSRRAAGRPAGPASDRPAEAIVVAPAQPAEVAAEAPSGPVARRETDSQVNAMANG
HSAEPTPVAAAPRRRARRAASRPAGPPVNPDQEG
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgccctggccaagctgctcgacctgagcagcaaggacatcatcagtgcgctgtcc
gacctgggcgaggaggtccgcggcgcgcagtccagcgtcagccgcgacgtcgcgctcaag
gtcgccgatgcccttatcggcacgcccgaggccgccgcctccacgccagaggcgcctgag
gtcgcggtgcccgaggtctccgtgcccgaggtcgaggcggagcccgaacccgagccggag
cccgtccgggtgcggcgaaccccgccgacgccggtgttcgcctcggcgtcgccgctgttc
ctgccgccggagccggtcgcggccccggtcaaggccgccccggtcaagccggtgcaccgc
gaggagcccgaggacctggtcgaggacgaggtcgaggagccccagtcggctcaggagacc
ccggccgacgatgacgacgacagcggcagccgccgccgccgtcgcggccgccgcggccgt
ggccgcggcaagggcgcagccgaggacggcgacaccgagcccaaggccgacgacgagtcc
accgaggccgaggaggccgaggcggaggagtccgacgacgagccgtccgacgccgccagc
cgccgccgtcgccgccgtcgccgccgcaagggcggggacgaggacggcgacgccgccgcc
accgacgacccgcccaacacggtcgtgcacgtccgcgaggcgcgcgacgagaagaccgag
gccgccgacgcccgcaacgaggtgcgcagcgtgcgcggctcgacccggctcgaggccaag
cgccagcgccgccgcgacggccgcgaggcgggccgcaggcgcgcgccgatcctcaccgag
tccgagttcctcgcccgccgcgaggccgtcgaccgcgcgatgatcgtgcgcgagaacccc
gaccgcacccagatcgccgtgcttgaggacggcgtgctcgtcgagcacttcgtcacctcg
gccgggaccgggtcgctcgtcggcaacgtctacctgggccgcgtgcagaacgtgctgccc
agcatggaagccgccttcgtcgacatcggccgcggtcgcaacgccgtgctctacgccggt
gaggtcgactgggacgccgccggtctggagggcaaggcccgcaagatcgagcaggccctg
tccaccggcgacagcgtgctggtgcaggtcaccaaggacccggtcgggcacaagggcgcc
cggctgaccacgcagatctcgctgcccggccgcttcctggtctacgtgcccggtggcggc
gccacgggcatctcccgcaagctgccggagaacgagcggcgcaggctcaaggacgtcctc
aagcggatcgtccccgaggacgccggtgtgatcatccgcaccgcctccgagggcatcagc
gaggaggaactgggccgcgacgtgcgtcgtctgcaggcgcagtggcaggtcatcaaggac
aagtccgatggcaccaacggcgtgaagaagtccggcgcgccgtcgctgctctacgaggag
cccgacctgctggtcaaggtcgtgcgcgacctgttcaccgaggacttctccgcgctggcc
gtccagggcgacaccgcctgggagaccatcgactcctacgtccgccacgtggcccccgag
ctgctggagcgggtgcgcaagcacgtcggcctgaaggacgtgttcaacgagcaccgggtc
gacgagcagctgctcaaggcgctcgaccgcaaggtctggctgccctccggcggctacctg
atcatcgaccgcaccgaggcgatgacggtcatcgacgtcaacacgggcaagttcaccgga
tcgggtggcaacctcgaggagacggtcacccgcaacaacctggagtcggccgaggagatc
gtccgccagctgcggctgcgcgacatcggcggcatcatcgtgatcgacttcatcgacatg
gtgctcgaatccaaccgggacctggtcctgcggcggctcaccgagtgcctcggtcgcgac
cgcacccgccaccaggtcgccgaggtcacctcgctcggcctggtgcagatgacccgcaag
cgggtcggcaccggtctgctggaggcgttcagcaccacctgtgagcactgcaagggccgc
ggcgtcgtggtcgccgcggagcccgcgaccaagtcgccgcccgctccgcagcagcagccc
gccgcgccgaaggagcacgagcagggcggcggccgcaggcgcaaccgcgaccgcggcaag
gagcagcccgccccggccgaggaggcaccgcgcgacgacttcgcccgcagcgccgtgcag
aacatcgccaaggccacggtgaaggtcgccgagcacgacggccacgagcacgacggccag
gtcgtcgcggcaggcagcgaggccgcgcagttcgagagcgctcggcccgccgagtcgacc
gacggacagtccgccgactcgatcgcgcccgccgaagccgcggccgtctccaccccggtc
gaggtcgacgacagcgaccggttcgaggagttcgggacggaacggaccgcgcccgccaag
cccgctcggtccggacgttcccggcgggcggcgggcaggcccgcgggccccgcgtccgac
cggcctgccgaggccatcgtcgtggccccagcgcagcccgctgaggtcgctgcggaagcc
cccagcgggcctgtcgcgcgccgcgagaccgacagccaggtgaacgccatggccaacggt
cattccgccgagcccaccccggtcgcggcggcgccgcgccgccgggcccgtcgggcggcg
tcgcgaccagcggggccgccggtcaaccctgatcaggagggctga
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