Alloactinosynnema sp. L-07: CRK57176
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Entry
CRK57176 CDS
T04489
Name
(GenBank) Putative SigmaB asociated two-component system sensor protein
Organism
alo
Alloactinosynnema sp. L-07
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAMP
HAMP_2
HATPase_c
Response_reg
GAF_2
HisKA
GAF
GAF_3
OmpH
RNase_Y_N
YscO-like
DUF3450
Motif
Other DBs
NCBI-ProteinID:
CRK57176
LinkDB
All DBs
Position
I:complement(2238217..2242755)
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AA seq
1512 aa
AA seq
DB search
MGETNTDEARVANARPGRATGKVGEPELRQLLAGLTAVRDGDFGTRLPDHAGGLLGEIAG
VFNGMVDQLSLFTSEVTRVAREVGTEGQLGGQAQVPGVSGTWEDLTDSVNAMAGNLTSQV
RDIAQVATAVAKGDLSQKIDVDARGEILELKETVNTMVDQLSSFADEVTRVAREVGSEGR
LGGQADVKGVSGTWRDLTDSVNFMAGNLTAQVRNIAQVTTAVAKGDLSQKIDVDARGEIL
ELKNTINTMVDQLSSFAAEVTRVAREVGTEGLLGGQADVKGVSGTWRDLTDSVNFMAGNL
TAQVRSIAQVSAAVAKGDLSQKITVTARGEILELKNTINTMVDQLSAFADEVTRVAREVG
TEGRLGGQADVKGVSGTWKDLTESVNVMGDNLTAQVRSIAEVTTAVARGDLSQKIRVDAR
GEILELKETINTMVDQLSAFADEVTRVAREVGTEGNLGGQATVRGVSGTWKDLTDNVNVM
ASNLTGQVRSITQVATAVARGDLSQKIIVEAKGEVAALAGVINTMVDTLSAFADEVTRVA
REVGTEGMLGGQARVPNVAGTWKDLTDNVNFMANNLTSQVRNIAQVTTAVAQGDLTRKID
VDARGEILELKTTINTMVDQLSSFAAEVTRVAREVGSDGRLGGQAEVEGVSGTWKRLTEN
VNELAGNLTRQVRAIAGVTSAVAEGDLTRSITVEASGEVAELKDNINSMVESLRETTRAN
QDQDWLKSNLARMSGLMQGRRDLAVVAELIVDELTPLVSAQYGAFYLAEDASDGPELGLI
GSYGRSKGTAPDQRFRFGESLVGQAARSRRTIAVDDLPPGYVTVSSGLGQAPPASLIVLP
MVVEDQVLGVIELAAVHRFTQIQRDFLEQLMETIAVNVNTLVANARTDELLGESQRLAAE
LQARSSELQTRQEELQSSNAELEEKAALLAAQNRDIETKNLEIEQARQELEARAQQLART
SKYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTPKQVEYAGIIHSAGSDLLQLIN
DILDLSKVEAGKMDVSPERIPLRRLLDYAEATFRPLTTQKNLDFRISSTGGVPTEVVTDD
ARLRQVLRNLLSNAVKFTESGTVELKIEPADPTELPATVGSHGTAIALRVVDTGIGIAEQ
QLDSIFGAFQQADGTTSRKYGGTGLGLSISREIAHLLGGSLTVDSAPGKGSRFTFFIPVA
RPDFLDLLAADSGKTLGPADEHANPDTSAAAGLRRLLVIEEHRPGLLSLVAESAAAELAA
TPDLSDARGPVEVITAVDVTEAAHALADHTCHCVVLELGMADGAAILDLMDERPDLAAVP
VLAHNSGRLDVDLERGLQARTGARPLELLSSLDELRERIALHLNADRPGDVLPLVRGHVA
DAPAVDGRLSGRTVLVVDDDARTVYALTGILETHGMHVLHATNGREGIEALTSNYAVDLI
LMDVMMPEMDGYTATAAIRAMPEYTNLPIIAVTAKAMVGDREKALAAGANDYVTKPVDAN
DLITRIQDRLRA
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagacgaacacggatgaggcgcgggtcgccaacgcccggccggggcgggccacg
ggcaaggtcggcgagcctgagctgcgccagctgctggcggggctcaccgcggtccgcgac
ggcgatttcggcactcggctgcccgatcacgcgggcgggttgctcggcgagatcgcgggc
gtgttcaacggcatggtcgaccagctctcactgttcacctccgaggtgacgcgcgtggcg
cgcgaggtgggcaccgagggtcagctcggtggccaggcgcaggtgccgggggtgtcgggc
acgtgggaggacctgaccgactcggtgaacgcgatggcgggcaacctgaccagccaggtc
cgcgacatcgcccaggtcgcgacggcggtggccaagggcgacctgtcgcagaagatcgac
gtcgacgcgcgcggggagatcctggaactgaaggagaccgtcaacacgatggtcgaccag
ctctcgtcgttcgccgacgaggtgacgcgggtggcccgcgaggtcggcagcgagggccgt
ctcggcggccaggccgacgtgaagggtgtgtcgggcacctggcgggacctgacggactcg
gtgaacttcatggcgggcaacctgaccgcccaggtccgcaacatcgcccaggtcaccacc
gcggtcgccaagggcgacctgtcgcagaagatcgacgtcgacgcgcgcggggagatcctg
gagctgaagaacaccatcaacacgatggtcgaccaactgtcctccttcgccgcggaggtc
acgcgggtggcccgcgaagtcggcaccgagggtctgctcggcggccaggccgacgtgaag
ggtgtgtcgggcacctggcgggacctgacggactcggtgaacttcatggcgggcaacctg
accgcacaggtccgctcgatcgcccaggtctccgccgcggtcgccaagggcgacctgtcc
cagaagatcacggtcaccgcgcgcggcgagatcctcgaactgaagaacaccatcaacacg
atggtcgaccagctctccgcgttcgccgacgaggtgacgcgcgtggcccgcgaggtcggc
accgagggccgcctcggcggccaggccgacgtcaagggcgtgtcgggcacctggaaggac
ctcaccgagtcggtgaacgtcatgggtgacaacctgaccgcccaggttcgctccatcgcc
gaggtcaccaccgccgtcgcgcggggtgatctctcgcagaagatccgggtcgacgcgcgc
ggggagatcctggaactcaaggagaccatcaacacgatggtcgaccagctctccgcgttc
gccgacgaggtgacgcgtgtggcccgcgaggtgggcaccgagggcaacctgggtgggcag
gccacggtgcgcggtgtgtcgggcacgtggaaggacctcaccgacaacgtcaatgtcatg
gcgtcgaacctgaccgggcaggtgcgctccatcacccaggtcgcgaccgcggtcgcgcgc
ggcgacctctcccaaaagatcatcgtcgaggccaagggcgaggtcgccgcgctggccggg
gtgatcaacacgatggtcgacacgctctcggcgttcgccgacgaggtgacgcgcgtggcc
cgcgaagtgggcaccgagggcatgctgggcgggcaggcgcgggtgccgaacgtggcgggc
acctggaaggacctgaccgacaacgtcaacttcatggcgaacaacctgaccagccaggtc
cgcaacatcgcccaggtgaccaccgcggtcgcccagggcgacctgacccgcaagatcgac
gtcgacgcccgcggcgagatcctggaactgaagacgacgatcaacacgatggtcgaccag
ctctcgtcgttcgccgcggaggtcacccgcgtggcccgcgaggtcggcagcgacggccgc
ctgggcggccaggccgaggtcgagggcgtgtcgggcacgtggaagcggctcaccgagaac
gtcaacgagctggccgggaacctgacccgccaggtgcgcgcgatcgccggggtgaccagc
gcggtcgccgagggggacctgacccgctcgatcaccgtggaggcctccggtgaggtcgcc
gagctcaaggacaacatcaactcgatggtggagtcgctgcgcgagaccaccagggccaac
caggaccaggactggctcaagtcgaacctggcccgcatgtccgggctcatgcagggccgc
cgcgacctcgccgtggtcgccgagctgatcgtcgacgagctgaccccgctggtctcggcc
cagtacggcgcgttctacctggccgaggacgcctccgacggaccggagctgggcctgatc
ggctcctacggcaggtcgaagggcaccgcaccggaccagcggttcaggttcggcgagtcg
ctggtcgggcaggccgcgcgcagccgccgcaccatcgccgtggacgacctgccacccggc
tacgtcaccgtctcctccggcctgggtcaggccccgcccgcgagcctgatcgtgctgccg
atggtggtcgaggaccaggtcctcggcgtgatcgagctggccgcggtgcaccggttcacc
cagatccagcgtgacttcctcgaacagctgatggagaccatcgcggtcaacgtcaacacc
ctcgtcgccaacgcccgcaccgacgaactgctcggcgagtcccagcgcctggccgccgaa
ctgcaggcccgctccagcgagctgcagacccggcaggaggaactgcagtcctccaacgcc
gaactggaggagaaggcggcgctgctggccgcgcagaaccgcgacatcgagaccaagaac
ctggagatcgagcaggcccgccaggaactcgaggcccgcgcccagcagctggcccgcacg
tcgaagtacaagtcggagttcctggcgaacatgagccacgagctgcgcaccccgctcaac
agcctgctgatcctggcccagctgctcgcccagaacccgacccggaacctgacccccaaa
caggtcgaatacgccgggatcatccactcggcgggctcggacctgctgcagctgatcaac
gacatcctcgacctgtccaaggtcgaggcgggcaagatggacgtcagcccagaacgcatc
ccactgcgcaggctgctcgactacgccgaggccaccttccggccgctgaccacgcagaag
aacctcgacttccggatcagctccaccggcggcgtgcccaccgaggtcgtcaccgacgac
gcccggctgcgccaggtgctgcgcaacctgctgtccaacgcggtgaagttcaccgagtcc
ggcaccgtcgaactcaagatcgaacccgccgacccgaccgagctgcccgccaccgtcggc
agccatggcaccgccatcgccctgcgcgtcgtggacaccggcatcggcatcgccgaacag
caactcgactcgatcttcggcgccttccagcaggccgacggcaccaccagccgcaaatac
ggcggcaccggcctcggcctgtcgatcagccgcgagatcgcccacctgctcggcgggtcg
ctcaccgtggacagcgcccccggcaagggcagccggttcaccttcttcatcccggtcgcc
cgccccgacttcctcgacctgctcgccgccgactccggcaagacgctgggccccgcggac
gagcacgccaaccccgacacgtccgcagccgcgggtctgcgcaggctgctggtgatcgag
gaacaccgccccggcctgctgtcgctggtcgccgagagcgccgcggccgaactggccgcc
acccccgacctgtccgacgcgcgcggtccggtcgaggtgatcaccgccgtcgacgtcacc
gaggccgcccacgccctggccgaccacacctgccactgcgtggtgctggaactgggcatg
gccgacggggccgcgatcctcgacctgatggacgaacgccccgacctggccgcggtgccc
gtgctggcccacaacagcggccgcctcgacgtcgacctcgaacgcggcctgcaggcccgc
accggcgcacgcccactcgaactgctgtcaagcctggacgaactgcgcgaacgcatcgcc
ctgcacctcaacgccgaccgccccggcgacgtgctcccactcgtgcgcggccacgtcgcc
gacgcacccgccgtcgacggcaggctcagcggccgcaccgtcctcgtcgtcgacgacgac
gcccgcaccgtctacgccctcaccggcatcctggaaacccacggcatgcacgtcctgcac
gccaccaacggccgcgaaggaatcgaggccctcaccagcaactacgccgtcgacctgatc
ctgatggacgtcatgatgccggagatggacggctacaccgccaccgccgccatccgcgcc
atgcccgagtacaccaacctgccgatcatcgccgtcaccgccaaggccatggtcggcgac
cgcgagaaggcactggccgcgggcgccaacgactacgtcaccaaaccggtcgacgcgaac
gacctgatcacccgcatccaggaccggctgcgcgcctag
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