Alloactinosynnema sp. L-07: CRK58868
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Entry
CRK58868 CDS
T04489
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
alo
Alloactinosynnema sp. L-07
Pathway
alo03030
DNA replication
alo03430
Mismatch repair
alo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CRK58868
03430 Mismatch repair
CRK58868
03440 Homologous recombination
CRK58868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alo03032
]
CRK58868
03400 DNA repair and recombination proteins [BR:
alo03400
]
CRK58868
Enzymes [BR:
alo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CRK58868
DNA replication proteins [BR:
alo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CRK58868
DNA repair and recombination proteins [BR:
alo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CRK58868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
CRK58868
UniProt:
A0A0H5CMZ1
LinkDB
All DBs
Position
I:complement(4076633..4080166)
Genome browser
AA seq
1177 aa
AA seq
DB search
MADSFAHLHVHTEYSMLDGAAKLKDMFAECERLGMTSVAITDHGHTNGIYDFFNQAKGAG
IKPILGIEAYLAPASRFSKDRVRWGDPGQKSDDVSGSGAYTHQTIWARTDEGLRNLMKLS
SRASLEGQLGKWPRMDRELIAEHSGGLMATTGCPSGEVQTRLRLGQFDEAVEAAAAWRDI
YGKDSFYVELMDHGIEIESRVRDGLVDVARKLDIPFVVTNDSHYTYAEERDSHDALLCVQ
TASTLQDPTRFRFDGSGYYLKSPDEMRAVDSSDPWQEGCRNTLLIAEKVDTTGMFEFRNL
MPKFPIPEGKTEDEYFREQVWEGMHRRFPNGIDDEHKRQVEFEIGVILQMGFPAYFLVVA
DLIQWAKNNGIRVGPGRGSAAGALIAYAMGITDLDPLAHGLIFERFLNPDRVSPPDIDID
FDERRRGDVIRYTTEKWGADKVAQVITFGTIKAKAAIKDSARVLFGQPGFAIADKISKVY
PPAVMAKDIPLNSLFDTQHKRYAEATEIRELYGSDPQVKEIIDTGKGLEGLIRNAGVHAC
AVILSAEPLMETIPLWKRPQDGSIITQFDYPTCESLGLLKMDFLGLRNLTVIDDALVNIE
RNGKPVPDLETLGLDDKPTYELLSRGDTLGVFQLDGGPMRDLLRLMRPDNFEDISAVGAL
YRPGPMGAKSHTNYALRKNKQQDITPIHPSLAEALEDILGTTYGLIVYQEQVMAIAQKLA
GYTLGQADLLRRAMGKKKKEVLDAEFVNFSGGMEKNGYPKDAIKTLWDILVPFADYAFNK
AHSAAYGLVSYWTAYLKANFPAEYMAGLLTSVRDDKDKAAVYLAECRKMGISVLPPDVNE
SEKDFAPVGNDIRFGLGAIRNVGANAVESIIKSRTEKGEFTDFSDYLRKVEAVACNKKVV
ESLIKAGAFDSLKHPRKGLFLIHTDAIDAVMDTKKAEAVGQFDLFGAGGDEEDSVTSVFD
VPVPDEFWESKHQLALEREMLGLYVSGHPLNGVEHILTSQSDTSIAAILEGGIGDGTQVV
IGGILAAVNRRVNRNGEPWASAMLEDLAGGIEVLFFPKTYAVIGMGVLEDAIVLVKARVA
KRDDRTSLIANDLAVPDLSNHAGAPFRLSMAATKCTPPLVAQLKDVLGAHPGTTEVHLKL
INGPRQTLLKLDDALRVSPSPSLMGDLKALLGPGCLA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactccttcgctcatcttcacgtgcacaccgagtactcgatgctcgacggagcg
gccaagctcaaggacatgttcgccgagtgcgagcgcctcggcatgacctcggtggcgatc
accgaccacggccacaccaacggcatctacgacttcttcaatcaggccaaaggcgcgggc
atcaagccgatcctgggcattgaggcctacctcgcccccgcgtcccgcttcagcaaggac
cgggtgcgctggggcgaccccggccagaagtccgacgacgtctccggcagcggcgcctac
acccaccagacgatctgggcgcgcaccgacgagggcctgcgcaacctgatgaagctgtcg
agccgggcgtccctggaggggcagctcggcaagtggccccggatggaccgcgagctgatc
gccgagcattccggtgggctgatggcgaccaccggctgtccctccggggaggtgcagacc
cggctgcggctcggccagttcgacgaggccgtcgaagccgccgccgcctggcgcgacatc
tacggcaaggacagcttctacgtcgagctgatggaccacggcatcgagatcgagagccgg
gtccgcgacggcctggtcgacgtcgcccgcaagctcgacattcccttcgtggtgaccaac
gactcgcactacacctacgccgaggaacgcgactcgcacgacgcgctgctctgtgtgcag
accgcgagcacgctgcaggacccgacccgcttccgcttcgacggctccggctactacctg
aagtcgcccgacgagatgcgcgcggtcgactcgtccgacccgtggcaggaggggtgtcgc
aacaccctgctgatcgccgagaaggtcgacaccaccgggatgttcgagttccggaacctg
atgccgaagttcccgatccccgagggcaagaccgaggacgagtacttccgcgagcaggtc
tgggaaggcatgcaccgccggttccccaatggcatcgacgacgagcacaagcgccaggtc
gagttcgagatcggcgtcatcctgcagatggggttcccggcgtacttcctcgtcgtggcc
gacctcatccagtgggccaagaacaacggcatccgggtcggccccggccgagggtccgcc
gcgggcgcgctgatcgcctacgcgatgggcatcaccgacctcgacccgctggcccacggc
ctgatcttcgagcggttcctcaaccccgaccgcgtcagcccgcccgacatcgacatcgac
ttcgacgaacgtcggcgcggcgacgtcatccgctacaccaccgagaagtggggcgcggac
aaggtcgcgcaggtgatcacgttcggcacgatcaaggccaaggccgcgatcaaggactcc
gcgcgcgtgctgttcggccaacccggcttcgccatcgccgacaagatctccaaggtctac
ccgcccgcggtcatggccaaggacatcccgctcaacagcctgttcgacactcagcacaag
cgctacgccgaggccaccgagatccgcgagctctacggcagcgacccgcaggtcaaggag
atcatcgacaccggcaagggccttgagggtctgatccgcaacgccggtgtacacgcctgc
gcggtcatcctcagcgccgagccgctgatggagacgatcccgctgtggaagcgcccgcag
gacgggtcgatcatcacgcagttcgactacccgacgtgtgagtcgctcggcctgctgaag
atggacttcctcggcctgcgcaacctgacggtcatcgacgacgcgctggtcaacatcgag
cgcaacggcaagccggtgcccgacctggagaccctcggcctcgacgacaagcccacctac
gagttgctgtcgcgcggcgacacgctcggggtgttccagctcgacggcgggcccatgcgc
gacctgctgcgccttatgcgccccgacaacttcgaggacatctcggcggtcggcgcgctc
taccggccggggccgatgggtgccaagtcccacacgaactacgcgctgcgcaagaacaag
cagcaggacatcaccccgattcacccgtcgctggcggaggcgctcgaagacatcctcggc
acaacctatggcctgatcgtgtatcaggagcaggtcatggcgatcgcccagaaactcgcg
ggatacacgctcggacaagcggacttgctccgccgggccatgggcaagaaaaagaaagag
gtcctggacgcggaattcgtcaatttctccggcggtatggagaagaacggatacccgaag
gacgcgatcaagaccctgtgggacatcctcgttcccttcgccgactacgccttcaacaag
gcgcattcggccgcgtacggactggtctcctactggaccgcctatctcaaggcgaacttc
ccggccgaatacatggccggactgctcaccagcgtgcgcgacgacaaggacaaggcggcg
gtctacctcgccgagtgccgcaagatgggcatctcggtgctgccgccggacgtcaacgag
tcggagaaggacttcgccccggtcggaaacgacatccgcttcggcctcggcgcgatccgc
aacgttggagccaacgccgtcgagtcgatcatcaagtcccgcacggagaagggggagttc
accgacttctccgactacctgcgcaaggtggaggcggtggcctgcaacaagaaggtcgtc
gaatcgctgatcaaggcgggcgccttcgactcgctcaagcacccgcgcaagggcttgttc
ctgatccacaccgacgccatcgacgcggtgatggacaccaagaaagccgaggcggtcggc
cagttcgacctgttcggcgcaggcggcgacgaggaagacagcgtgaccagtgtcttcgac
gtccccgtgcccgacgagttctgggagtccaagcaccaactcgcgctggagcgggagatg
ctggggctctacgtgtccggccacccgctcaacggcgtcgaacacatcctgacctcgcag
tcggacacgtcgatcgccgccatcctggaaggcgggatcggcgacggcacgcaggtggtg
atcggcggcatcctcgccgcggtcaaccggcgggtgaaccgcaacggcgagccgtgggcc
tcggcgatgctggaggacctggcaggcggcatcgaggtgctgttcttccccaagacgtac
gccgtgatcgggatgggcgtgctggaggacgcgatcgtgctggtcaaggccagggtggcc
aagcgcgacgaccgcacgtcgctgatcgccaacgacctcgccgtgcccgacctgagcaac
cacgcgggcgccccgttccggctgagcatggccgcgacgaagtgcacgccgccgctggtc
gcccaactcaaggacgtcctcggcgcccatcccggcaccaccgaggtccatctgaagctg
atcaacggcccgcgtcagaccctcctcaagctcgacgacgcgctgcgggtcagcccgtcg
ccgtcgctgatgggcgacttgaaggcgctgctcggaccgggctgtctcgcctag
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