Aerococcus loyolae: CJ190_007310
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Entry
CJ190_007310 CDS
T09408
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aloy
Aerococcus loyolae
Pathway
aloy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aloy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJ190_007310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aloy03400
]
CJ190_007310 (mfd)
Enzymes [BR:
aloy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJ190_007310 (mfd)
DNA repair and recombination proteins [BR:
aloy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJ190_007310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
WIK92171
LinkDB
All DBs
Position
complement(1612393..1615938)
Genome browser
AA seq
1181 aa
AA seq
DB search
MNLENYLNEKIIDSKLKNTLRTGQSVLYLGLQAASKAYMIAEIQASNPDKKTVVLTNNLL
QAERFYEDLQTFNPEADLHLYSSPESVAEDLAIQSPEALGDRLATLDWLLDEDSSGILIT
PIFGLKRPLTPVAEWKQLVKSIQRGQELAVDQLKADLLLLGYERVEAVLRPGEISVRGDI
VDLFPLTSPQPLRLSLAFDEVERITTFDVNSQKSQDDLESVTILPAKDLLFSPDRLKAGV
THLEKVAQEKVEKLQDEAIKKQVQAIFQDEIQAWSAGERTERTHYFSQILYPDSCSLLDY
VGEGQTLVLDDMTRLIELSQEIDQRAALYLQGKVEAGHLPPIDQIYLDSHDQVMAYSGRK
FYLAQWQKGYGNMRFDGLYQFQTRTVTPFYHNKEAIKLEFEAWLRMGRSLLIFIEEEDKA
RDLEKDLKAMDFQAVLTQADQIIPEAINIIAGHLSGGIEFVDSQVVLLAQSDLFDQAKRR
RRKNTNNLSNAERLKSYQELKPGDYVVHVNHGIGQFVGVETIEVAGNHKDYLSIVYADNA
SIHVPIDQIDLVQKYVSAEGKSPKLNKMGGIEWQKTKQRVSKKIEDIADDLVDLYAERET
RKGYAFSPDNEDQAAFEDEFPYPETDDQLRSIQEIKADMEKEKPMDRLLVGDVGFGKTEV
AMRAAFKAMLDGKQVAFLVPTTVLAQQHYETMLERFKDYPFTIDLLSRFRSPAEQKHVIK
GLKEGSVQLVIGTHRLLSKDIKFLDLGLLVVDEEQRFGVKAKERLKALRKNVDVLTLTAT
PIPRTLNMSMMGVRDLSVIETPPANRFPVQTYVMEQNYGAIRDAIERELARNGQVFYLFN
NVQNIQEKANFIEELVPQARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDM
PNVNTLLVEDADRMGLSTLYQLRGRVGRSNRVAYAYFMYRPDKALNEASEKRLTALKDFT
ELGAGFKIAMRDLSIRGAGNLLGQEQHGFVNSVGYDLFQQMLDEAIRKKQGKAAKRPQSP
TEIELHIDAYIPSEYIQDENQKVEIYKRINLLDDVDAMWDLDDELLDRFGEPPVEVQWLL
AVGAMKSYATAIGVEKITRKGKGIELVFTKQQDPSQLTPLIFKALEDIPMKLQIKMANDQ
LVMQLNTKELSTDQWLDYLLQFLTQLSKDLKAESDQVEGEN
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagaaaattatctcaatgagaaaattattgacagcaagctaaaaaacaccttg
aggacggggcagagcgttctctacctgggtttacaggcggctagtaaggcctacatgatt
gctgaaattcaagccagcaatccagataaaaagaccgtggtcttaaccaacaacctcttg
caggcggagcgtttttatgaagacctgcaaaccttcaatccagaagccgacctccacctc
tattccagtccagaaagtgtggctgaagacttagccattcaaagcccggaagctctgggg
gatcgtttggcgaccttagactggttacttgatgaagatagtagcgggatcttaattact
cctatcttcggactgaagcgtcccttgactccagtggccgaatggaagcaattggttaaa
agcattcaacggggccaagagctagcagtcgaccagctgaaagcagacttattgctcttg
ggttatgaacgggtggaggccgttttacgaccaggtgaaataagtgtccggggggatatt
gttgacctcttccccctaactagtccccagcccttacgactatccttggccttcgatgaa
gtggaacgtattacgacttttgacgtcaacagccaaaagagccaagacgacttagaaagc
gtcaccatcttaccggctaaggacctcttgtttagccctgaccgcctaaaagctggggta
actcatttagaaaaagtagcccaagagaaagttgagaagctccaagatgaagccatcaaa
aaacaagtccaagccatcttccaggatgaaatccaagcctggtcagcgggggaaaggacc
gaacggacccattattttagtcaaatcctctatccagactcctgcagcctccttgactat
gtgggggaggggcagactctagttctggatgatatgacccggctgattgaattatcccag
gaaattgaccagcgagcagccctttatctgcaagggaaggtggaagctggccatctgcct
ccgatcgaccagatctatttagatagtcatgaccaagtgatggcctattcggggcggaag
ttttacctggctcaatggcagaagggttacggaaatatgcgctttgatggcctctatcaa
ttccaaactcggacagtgacacctttttaccataataaagaagccattaagctggaattt
gaagcctggctgagaatgggccggtctttactgatctttatcgaagaagaagacaaggcc
cgcgacttagaaaaagacctcaaagccatggactttcaggcggtcttgacccaggcagat
caaatcattcctgaagccattaatattattgctggccacttgtcgggcgggattgaattt
gttgacagtcaagtggtcctcttagctcaaagtgacctctttgaccaggccaagcgccgc
cgtcgtaaaaataccaataatctctctaatgctgagcgcttaaagagctaccaagagtta
aaacccggcgactatgtggtccatgttaaccacgggattggtcagttcgttggggtagag
accatcgaggtagcaggaaaccacaaggactatctcagtatcgtctatgccgataatgcc
tctatccacgtccccatcgaccaaatagacttggtacaaaaatatgtctcggcggaaggt
aagagccccaaactcaacaaaatgggcggaatcgaatggcaaaagaccaagcaaagggtc
agcaagaaaattgaagatattgccgatgacttggtggacttgtatgcagaaagggagacc
agaaagggctatgcctttagtccggacaacgaagaccaggctgcctttgaagacgaattt
ccttatcctgaaactgatgaccagctccgctcaatccaggaaattaaagctgacatggaa
aaagaaaagcccatggatcgtctcctcgttggggacgtgggctttgggaaaactgaagtt
gccatgcgggccgcctttaaggctatgcttgacggtaagcaagtcgccttcctggtgccg
acgactgtcttagcccagcaacactacgaaaccatgctagagcgctttaaggactatcct
tttactattgacttattgagtcgtttccggagtccggctgaacaaaagcatgtcattaag
ggcttaaaagagggcagcgtccaattagtgatcggtacccaccgactcctatccaaggat
attaaattcttagacctaggcctcttagttgtcgatgaggaacaacgctttggggtcaag
gccaaggagagattaaaggccttgcggaaaaatgttgatgttcttaccctaacggcaaca
ccgatccctcgtaccttgaacatgtctatgatgggggtcagggacttgagtgtgattgaa
acgccaccagctaaccgttttccggtacagacctatgtcatggaacaaaattatggggcg
atccgggatgccattgaacgggagttagcccgcaatgggcaagtcttttacctctttaat
aatgtgcaaaatatccaagaaaaagccaactttattgaggaattagtcccccaagctcgg
gtagcgattgcccatggtcagatgcacgccaatcaattagaggaagtcttaatggacttc
ttggccggcgatgacgatgtcttagtcactaccaccattattgaaaccgggattgatatg
cccaatgtcaatacccttttagtggaggatgctgaccggatgggcttatcgaccctctat
caattacggggccgggtaggccggtccaaccgggtagcctatgcttactttatgtaccgg
cctgataaggccctcaatgaggccagcgaaaaacgtctgaccgccctcaaagactttact
gaattaggggcagggttcaaaatcgccatgcgcgacctctccattcgtggagccggcaac
ctcttggggcaagaacagcatggttttgtcaattcggtgggttatgacctctttcaacag
atgctcgatgaagccatccgtaagaaacaaggcaaggcagctaagcggcctcagtcaccg
acagaaattgaattgcacattgatgcctatattccttcagaatatatccaggatgaaaat
caaaaggtggaaatctacaaacgcatcaacctcctggacgatgtcgatgccatgtgggac
ttggatgatgaattattggaccgctttggtgagcctccggtagaagtccaatggctctta
gcagtcggggcgatgaagtcctatgctactgcaataggggtggagaaaatcacgcgtaag
gggaaggggattgagctggtctttaccaagcaacaagaccctagccaattgaccccgttg
attttcaaggctctagaagatatccctatgaaactacaaatcaagatggccaatgaccaa
ttagtcatgcagttaaacactaaagaactctcaaccgatcagtggttagactatctgctc
caattcttaacccagctcagtaaggatttaaaggcggaatctgaccaagtggaaggggag
aactag
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