Aerococcus loyolae: CJ190_007710
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Entry
CJ190_007710 CDS
T09408
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aloy
Aerococcus loyolae
Pathway
aloy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aloy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJ190_007710 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aloy03021
]
CJ190_007710 (rpoC)
03400 DNA repair and recombination proteins [BR:
aloy03400
]
CJ190_007710 (rpoC)
Enzymes [BR:
aloy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJ190_007710 (rpoC)
Transcription machinery [BR:
aloy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJ190_007710 (rpoC)
DNA repair and recombination proteins [BR:
aloy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJ190_007710 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WIK92237
LinkDB
All DBs
Position
complement(1699592..1703272)
Genome browser
AA seq
1226 aa
AA seq
DB search
MVDVNKFESIKIGLASPDKIRSWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTKDYEC
ACGKYKRIRYAGVVCDRCGVEVTKAKVRRERMGHLELASPVTHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASHVVIDGGDTPLAPKQLLSEREYREYKAEYGDRFQAGIGAEAIKELLR
RVDLDRECAELKEELRTAKGQKRTRAIRRLDIMDAFRKSGNKPEWMVLDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALVDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAIGPHLKFYQCGLPKE
MALELFKPFLIRELVDREIATNAKHAKRMIERKDDAVWEPLGEIMREHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLACEAYNADFDGDQMAVHLPLGEEAQAEARILMLAASHIL
NPKDGQPVVTPSQDMVLGNYYLTQEEAGMTGEGMKISSLSEAHIAYANGAAQLHTRVVIS
PKHFPKYAWTDQQKEQLMITSIGKLFFNEIMPADFAYINEPTSENLNGQTADRFFVNPGE
DTDQAIAQLETTAPFKKGYLEEIIAAIFKRLKVTETSQFLDRLKALGYYYSTKSGITVGI
ADITVLDSKNQYVDKGHKRVDNIMKQYRRGLITDDERYDQVINTWNDVKNDIEKELTHSL
SPDNPFFIMMDSGARGNISNFTQLAGMRGLMAGPSGKIIELPVTSNFREGLSVQEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRENDCNTDRGLTVSAIKEGNEMIESLA
ERLTGRYIQKTVRDPKTGEILAHHNELVSPETAAKIEDAGIKQVTIRSAFTCRTRHGVCK
YCYGSDLATNGEVEVGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIV
EARHPKGQAVITEVTGEVVAIDIEEETRTKTVTVKGETDEREYKVPYTARMKVSEGDLIE
RGAQLTEGSIDPKELLRITNSLTVENYMLAEIQRVYRQQGVDINDKHVEVLLRQMMRKVR
VLDPGASDLLPGHLMDIGDFEDANEEIIKTGQQPATCQPVLLGITKAALETKSFLSAASF
QETTKVLTDAAISGKRDELLGLKENVIIGKIIPAGTGVGRYRHMEPEKLGVEQVVEVPAH
EPSDNENLAEIATITKPIDENYSGMP
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgatgtaaataaatttgaaagtataaaaattggtttagcctcaccagataagatc
cgttcctggtcccatggtgaagtcaagaaaccagaaacaatcaactaccgtaccttaaaa
ccagaaaaagacggtcttttctgtgaacgtatttttgggccaaccaaggactacgaatgt
gcttgtggaaagtataaacggatccgttatgcgggtgtagtatgtgaccgttgtggggtt
gaagtaaccaaggctaaagtccgtcgtgaacggatgggacacttggaactcgcttcacca
gttacccatatttggtactttaaaggcattcctagtcggatgggcctgatcttagatatg
agcccacggtctttagaagaagtgatctattttgcttcccacgtggtgattgatgggggt
gacacgcctctagcgcctaagcaattgctttctgaacgggaataccgggagtataaggcg
gagtatggtgaccgtttccaagcgggcattggtgctgaagccattaaggaactcttacgc
cgcgtagacctggaccgtgaatgtgcggaattaaaagaagaattacggactgccaagggt
caaaaacggacccgggctatccgccgcctagacatcatggatgcctttagaaaatccggt
aacaaaccggaatggatggttcttgatgtgatcccagtgatcccacctgaactacgtccg
atggtgcaattagatgggggccgtttcgcaaccagtgacttaaacgacctctaccgccgg
gtgattaaccggaataaccgtctaaaacgtttattagacctcaatgcaccaaatattatt
gttcaaaatgaaaaacggatgctccaagaagctgttgacgccttagtggacaatggccgt
cgcggtcgtccggtgactggaccgggtaaccggccactcaaatctctttcacatatgttg
aaagggaaacaaggtcgtttccgtcaaaacctcttagggaaacgggtggactattcaggt
cgttccgttatcgccattggcccgcacttgaagttctatcaatgtggtctgcctaaggaa
atggctttagaactctttaaacccttcttgattcgggaattggtggaccgtgaaattgcc
accaatgctaaacatgccaaacggatgattgaacgcaaggatgatgctgtgtgggaaccc
ctcggcgagatcatgcgtgaacacccggtattgcttaaccgggcacctaccctccaccgt
ttagggatccaagcctttgaaccagtcttggttgaaggaaaggctatccgcctgcaccca
ttagcctgtgaagcctataatgccgactttgacggggaccaaatggcggtccacttgcct
ttaggagaagaagcccaagccgaagcccgtatcttaatgctggctgcttcccatatccta
aaccctaaagatggacaacctgtggtcaccccatctcaagacatggttttagggaattac
tacttaacccaagaagaagctgggatgactggggaaggaatgaagatttcttcactcagc
gaagcccatattgcttatgccaatggggcggcccaattgcatacccgggttgtgattagt
cctaaacacttccctaaatatgcttggaccgaccaacaaaaagaacaattaatgattacc
tccattggtaaattgttcttcaatgaaatcatgccggctgattttgcctatattaatgag
cccacatcagaaaacttaaatggccaaacggctgatcgtttcttcgtcaaccctggggaa
gatactgaccaagccattgcgcaattagaaactaccgctccatttaagaagggctactta
gaagaaattattgccgctatcttcaagcgcttgaaggttaccgaaacctcacaattctta
gaccgcttgaaagcgttgggttactactactccaccaagtcagggattaccgttgggatt
gctgatattaccgttttagactctaagaaccaatacgtggataagggtcacaaacgcgtg
gacaatatcatgaagcaataccgtcgtggtttaattaccgatgacgaaagatatgaccaa
gtcattaacacttggaatgacgtcaagaacgacattgaaaaagaattaacccacagtctg
tccccagacaaccccttctttatcatgatggactctggtgcccgtggtaacatctccaac
tttacccaattagcggggatgcgtggtttgatggcaggaccaagtggtaagattattgaa
ctgccagttacttctaacttccgtgaagggctatcggttcaagaaatgtttatctccact
cacggggcccgtaaagggatgaccgataccgccttgaagacagccgactctggttaccta
acccgtcgtctggttgacgttgcccaagacgtgattatccgggaaaatgattgtaatacc
gaccgtggtttaaccgtttcagccattaaagaaggcaacgaaatgatcgaaagcctagct
gaacgtctcaccggtcgttatatccaaaaaactgtccgtgatccaaaaaccggtgaaatt
cttgctcaccataatgagctggtttcaccagaaactgctgctaagattgaggatgctggc
atcaagcaggtcaccattcgctccgccttcacttgtcggacccgtcatggagtatgtaag
tactgctacggttctgaccttgcaaccaatggtgaagtagaagtcggtgaagcagttggt
atcgtggctgcccaatccattggggaaccgggtacccagttgaccatgcgtaccttccat
accggtggggttgccggggatgacattacccaaggtttacctcgtgttcaagaaatcgtt
gaagcccgtcatccgaaagggcaagcggtcattactgaagtgaccggtgaagtggttgcc
attgatattgaagaagaaacccggaccaagacagttaccgttaaaggggaaaccgatgaa
cgggaatacaaggtgccttacactgcccgcatgaaggtgagtgaaggggacttgattgaa
cgtggtgcccaattgacggaagggtccattgatcccaaagaattgctccggattaccaac
tccctcaccgtagaaaactacatgttagcggaaatccaacgggtttaccgtcaacaaggg
gtggacattaacgacaagcacgtggaagtcctcttacgtcaaatgatgcgtaaggtaaga
gtcttagacccaggcgcttctgacttgttgccagggcacttaatggacattggtgacttt
gaagatgccaatgaggaaatcattaagactggccaacaaccggctacctgtcaaccagtc
cttttaggaattaccaaggcagccttggaaaccaagtccttcctatctgccgcttccttc
caagaaaccaccaaggtcctcaccgatgcggccattagtggtaaacgggatgagttactc
ggattgaaagaaaacgtcattattggtaagataattcctgcgggtactggtgtcggacgt
taccgtcacatggaaccagaaaaattaggcgtggaacaggttgttgaagtgccggcccat
gagccatccgacaacgaaaatttagcagaaattgctacaattaccaaaccaatcgatgaa
aactatagcggtatgccttaa
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