Poseidonibacter parvus: LPB137_06010
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Entry
LPB137_06010 CDS
T04722
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alp
Poseidonibacter parvus
Pathway
alp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB137_06010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alp03019
]
LPB137_06010
Enzymes [BR:
alp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB137_06010
Messenger RNA biogenesis [BR:
alp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB137_06010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
APW65430
UniProt:
A0A1P8KLK7
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All DBs
Position
1211244..1212533
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AA seq
429 aa
AA seq
DB search
MSFSNLGLSDPILKAIKEQGYTEPTPIQKQSIPIILTKKDVLAGAQTGTGKTAGFTLPLL
QRMRERKTKGKPYVRALILTPTRELAAQVGESVSTYGKYLPFKSAVIFGGVGINPQKAAI
RKGLDILTATPGRLLDLVNQDCLDLSRVEFFVLDEADRMLDMGFIHDIKKVLALLPKHRQ
NLLFSATFSDEIKKLADGLLNKPTLIEVARRNTSSEIVSQVIHSVDKSRKRELLSTIIIK
GKWKQVLVFTRTKHGANRLAEQLGKDGISAAAIHGGKSQGARTRALANFKSSEIKVLVAT
DIAARGIDIDQLPHVVNYELPNIAEDYVHRIGRTGRAGNEGEAISLVCIDELGLLKDIEK
LIKKTIKNVPIEGFEVDPRIKAEPIQKKKTPRGSNGSNSGNRNNSNRRKPESKKNNPRRN
PRANTKRPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcaaacttaggattaagtgatcctattttaaaagctattaaagagcaaggt
tatacagaaccaactccaattcagaagcaatcaattccaattattttaacaaaaaaagat
gttttagcaggtgcacaaacaggtacaggtaaaacagctggttttacacttcctttatta
caaagaatgagagagcgaaaaacaaaaggtaagccttatgttagagcacttatcttaacg
cccactagagaacttgcagcacaagtaggcgaaagtgtaagtacttatggaaagtatctt
ccttttaaatcagcagttatttttggtggagttggtattaatcctcaaaaagcagcaatt
agaaaaggtttagatattttaacagcaactcctggacgacttttagacttagttaaccaa
gattgtttagacttaagtagagttgagttctttgttcttgatgaagctgatagaatgctt
gatatgggctttattcacgatattaaaaaagtattagcacttttaccaaaacatagacaa
aatttacttttttctgcaactttttcagatgaaataaaaaaattagcagatggacttctt
aataaaccaactttaatagaagttgcaagaagaaacacttcttcagaaattgtgtcacaa
gtaatccacagtgttgataaaagtagaaaaagagagcttttatctacaattattataaaa
ggtaaatggaaacaagttttagtatttacaagaacaaagcatggagcaaatagactagca
gaacaacttggaaaagatggaatctctgcagctgcaattcatggtggaaaatcacaaggt
gcaagaacaagagctttagctaattttaaatcatctgaaattaaagtattagtagcaact
gatattgcagctagaggtattgatatagaccaactgcctcatgtagtaaattatgagtta
ccaaatatcgcagaagattatgttcacagaattggaagaactggtcgagcaggaaacgaa
ggtgaagctatttctttagtttgtattgatgaattaggtcttttaaaagatattgaaaaa
ctaattaaaaaaacaattaaaaacgtcccaattgaaggctttgaagtagacccacgaatt
aaagcagaaccaattcaaaagaaaaaaactccaagaggttctaatggttctaattcaggc
aatagaaataattcaaatagaagaaaaccagaaagcaagaaaaacaatccaagaagaaat
ccaagagcaaatactaaaagaccgagttaa
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