Alteromonas sp. RKMC-009: DS731_02150
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Entry
DS731_02150 CDS
T05653
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
alr
Alteromonas sp. RKMC-009
Pathway
alr03420
Nucleotide excision repair
alr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DS731_02150 (uvrD)
03430 Mismatch repair
DS731_02150 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alr03400
]
DS731_02150 (uvrD)
Enzymes [BR:
alr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DS731_02150 (uvrD)
DNA repair and recombination proteins [BR:
alr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DS731_02150 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
DS731_02150 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AYA62904
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All DBs
Position
complement(504205..506376)
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AA seq
723 aa
AA seq
DB search
MDVSLLLDDLNDKQREAVAAPQSNMLVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAV
TFTNKAAKEMRGRIEHLMKRSMHTMWMGTFHGLAHRLLRAHHAEAGLPENFQILDSDDQY
RLIRRILKALNLDEKHWPPRQVQWYINGNKDEGLRPQHIDTHNDHTQQKMRDIYAAYQES
CDRSGLVDFAELLLRAHELWARNPEILAHYQKRFRAVLVDEFQDTNNIQYAWLRMLCSTG
ENTIMIVGDDDQSIYGWRGANVDNIHKFLKDFPKPETIRLEQNYRSTSTILKAANAVIDN
NTGRLGKELWTDGADGELVSVYAGFNELDEARFIVSQIKSWLQQGNALSESAILYRNNAQ
SRVLEEALLHEGLAYRIYGGLRFFERQEIKDALGYLRMVNHPHDDAAYERVVNTPSRGMG
EKTLSAIRETARAHNCSLWQASNLLLTDGSLKGRAANALQSFIVLITDLEQAMADLPLEE
QADKAIKHSGLYAMYQAEKGEKAQARLENLEELVTACKQFIVPEEADEMTPLSAFLAHAS
LEAGETQADTDQDAVQMMTIHTAKGLEFPLVFMAGVEEGMFPSQMTNDEPGRMEEERRLA
YVGMTRAMKKLFITYAESRRLYGQDKYHTASRFIREIPSECVEEVRLKSTVSRPVHNRFS
RATSHESFEQTGFQLGQRVMHRKFGEGVVLNYEGSGDHARVQVNFDEFGSKWLVLAYAKL
QPL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatctttacttctcgacgacctaaatgacaaacaacgcgaagccgttgctgcc
cctcagtcgaacatgctggtgcttgcaggcgccggtagtggtaaaacacgggtactggtt
caccgcatcgcctggctgatggaagtagagaacatcgcgccattttcaattctggcggta
accttcacgaataaagcagccaaggaaatgcgcggccggattgaacatctgatgaagcgc
agcatgcacaccatgtggatgggtaccttccacggcctggcgcatcgtttgctcagagca
catcacgccgaagccggcttgccggaaaatttccagatactggattccgacgaccagtac
aggttgatccgccgtattctgaaagcgctgaatctggatgagaagcactggccgccgaga
caggtacagtggtacatcaatggcaataaagatgaaggcttaagacctcagcacatcgat
acccataacgatcatacccagcagaagatgcgcgatatttatgcggcctaccaggagtcc
tgtgaccgctccgggctggttgattttgccgaactgcttttgcgggcacatgaattgtgg
gcccgtaatccggagattctggctcactaccaaaaacgtttccgtgcggtactggtcgac
gaattccaggacaccaataacattcagtatgcctggctgcgcatgctgtgcagtaccggc
gaaaacaccatcatgattgtgggcgacgacgatcagtcaatttatggctggcggggtgca
aatgtcgataatatccataagtttctgaaggacttcccgaagccggaaacaatccgtctc
gaacagaattaccgctccaccagcacaattctgaaagccgcaaacgcggtcatcgacaac
aacacaggccggctcggcaaagagctctggactgacggtgctgacggtgaactggtatct
gtatatgccggtttcaacgaactggatgaagcccgctttattgtgtcgcaaattaaaagc
tggctgcagcagggtaacgccctgagtgaaagtgccattttataccgcaacaatgctcag
tcccgggtactggaagaagcgttgttgcatgaaggtctggcttaccggatttacggtggt
ctgcggttcttcgaacgccaggaaatcaaagatgcgctgggttatctgcgcatggttaac
cacccacacgatgacgctgcctatgaacgggtagttaatacacccagccggggcatgggt
gagaaaaccctgtcagccattcgtgagacagccagagcgcacaattgctcgttgtggcag
gccagcaacttattactcaccgacggttccctgaaaggccgtgcagccaacgccttgcag
agttttattgtactgataaccgatcttgaacaggcaatggcggatttaccgctggaagag
caggccgacaaagctatcaaacattccggcttatatgccatgtaccaggctgaaaagggt
gaaaaagcacaggcacgcctggaaaaccttgaggaactggtcaccgcctgtaagcagttt
atcgtgccggaagaagccgatgaaatgacgccgctgagtgcatttctggctcatgcctcg
ctggaagccggtgaaacacaggcagacactgaccaggatgcggttcagatgatgaccatt
cacaccgccaaaggcctggagtttccgctggtgtttatggccggtgttgaagaaggcatg
ttccccagccagatgaccaatgatgagcccggccgtatggaagaggaacgccgtctggcc
tacgtgggtatgacacgggccatgaagaagctctttattacctatgcggaaagccgccgg
ctttatggccaggacaagtatcacacggcgtcacggtttatccgcgaaattccgtcggaa
tgcgtggaagaagtacggttaaaatcaacggtatcccgccctgttcataaccgcttttca
cgggcgacgtcccacgaaagttttgaacaaaccgggtttcagttgggtcagcgtgttatg
caccgtaaattcggtgagggtgtggtactgaactatgaaggttccggcgatcacgccaga
gtacaggtaaatttcgacgagttcggcagcaaatggctggtactggcctatgctaaattg
cagccactctaa
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