Alteromonas sp. RKMC-009: DS731_03505
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Entry
DS731_03505 CDS
T05653
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
alr
Alteromonas sp. RKMC-009
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alr03021
]
DS731_03505 (rapA)
Transcription machinery [BR:
alr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
DS731_03505 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
LCIB_C_CA
TRADD_N
Motif
Other DBs
NCBI-ProteinID:
AYA63141
LinkDB
All DBs
Position
complement(793979..796804)
Genome browser
AA seq
941 aa
AA seq
DB search
MSSVNTFSAGQRWLSNTESELGLGAVLSVDFRSVEILFPATGDSRIYTKDNAPLTRLIFT
EGDVITSEEGWTLQIQKVEESNGVLIYHGLREDTKETARLPETFLDHHIRLNQPEQRLFN
FQTDTPKWFELRQKALEHQHAYLKSGTIGLSGARIELIPHQLHIASEVGNRHAPRVLLAD
EVGLGKTIEAALVIHRQLKTGRAQRVLIVVPDSLVHQWLVEMLRRVNLAFAIFDESRCDA
LDESGTNPFENEQLVLCSISFLKDNPKRHQQALDAGWDLLVVDEAHHLAWSKDAPSEEYQ
RIEALAEITAGVLLLTATPDQLGHESHFARLRLLDPARFHDYNHFLEEESQYSALAEAVS
PLLTDEPLSADAREKLTSLAPEITGRYSDMDEPATRKAILSQLIDTHGTGRLLFRNRRAG
IEGFPVRMLNSYPLPLPEMYDSAVCGGELFDALYPERQSALVNSWTDNDPRVDWLLEFLP
SVRPAKVLLICADKRTAQQLGEVIRTRSGIRQSVFHEGMSIVERDKAAHYFSDPEEGAQI
LLCSEIGSEGRNFQFAHHLVLFDLPLTPDLLEQRIGRLDRIGQTKDIQIHVPYISQSAQE
VLLKWYRDGLGAFSHTCPTGSGVFEEVQAQLVEACLDPENEALVSELVTTSKALNDTLKA
KLDAGRDRLLELNASGEGKVDGLLEEIVEQDASVELSRFMGRLFDALGVNQEEKGNDCFI
LTPSESMVNHLPGLDPEGMTVTYRRRVATTLEHVHFLSWDHPLVHNAIDMVLTDVLGKAS
VGFIADKGLPKGAFWLESLFVLQANADRQLQPGRFLPATPLRICTDGHGKPVNLVFDAPR
KAGRKIVQQLIQALQQALTLHIEKATAAAQQQANQIQHDAIETMQATLSAEARRLRDLQA
QNPSIRDSEIEFIETQLTGLTAALQSASVQLEGLRIVVNNP
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgagttctgtaaatacgttttcagccggtcagcgctggttgagtaacactgagtctgaa
ttaggtttaggggctgtgctcagcgtcgattttcgttctgttgagatactttttcctgca
accggtgacagccgtatttacacgaaggacaacgcccctctcacccgtcttatctttact
gaaggcgacgtcattaccagcgaagaaggctggactttacaaatacaaaaagtagaagaa
agcaacggtgtactgatttatcacggattgcgtgaggacaccaaagaaacggcgcgactg
ccggaaacctttctcgaccatcacatccggctgaaccagccggagcagcgtttatttaac
tttcaaaccgataccccaaagtggttcgaactgcgccagaaagcactggaacaccagcat
gcgtacctgaaatcaggcacgattggcttgtctggtgcgcggattgaattgatccctcac
cagttacatattgcctctgaagtgggtaaccgccatgcaccacgggtattgcttgccgat
gaggtgggattgggtaaaaccattgaagccgcactggttattcaccgccagttaaaaacc
ggccgggcccagcgggtactcattgtggtaccggattccctggtccatcagtggctggtt
gaaatgctgcgccgggtaaatcttgccttcgctatttttgatgaaagccgttgcgatgcg
ctggacgagtcgggcacgaacccgtttgagaacgaacagctggtactgtgcagtatcagt
ttcttaaaagacaatcctaaacgccaccagcaagcccttgatgccggctgggatttactg
gttgtcgacgaggcccatcatctggcctggtccaaagatgcgccttctgaagaatatcaa
cgcattgaggcgctggcagaaatcaccgccggcgttctgctgttaacagctacccctgat
cagctgggacatgagagtcactttgcccgactgcgactgttagatcctgccaggttccat
gattacaatcacttccttgaagaagaaagtcagtacagtgcactggcagaggcagtgtca
ccgttactcacagacgagccgttatctgctgacgcaagagaaaaactcacgtctctcgcg
cctgagataaccggccgctacagcgatatggatgaaccggccacacgtaaagccattctc
agccagctgattgatacacacggcacaggccggttgttattccgtaaccgtcgcgccggt
attgaaggtttcccggtaagaatgctgaacagctatccgttacctctgccggaaatgtac
gacagtgccgtctgcggcggggaactcttcgacgcgttatatccggagcgccagagcgcg
ctggttaacagctggaccgataacgacccccgtgttgactggctactggagtttttaccc
tcagtccgccctgccaaagttctgctgatttgtgccgacaaacgcaccgcacagcaactg
ggtgaagtgatcagaacccgcagcggtattcgccagagtgtatttcatgaaggcatgagt
attgtagagcgggataaagcggcccactatttctccgacccggaagaaggggcgcagatc
ttactgtgtagtgaaattggcagcgaaggccgtaacttccagtttgcccatcatctggtg
ctgtttgatttaccgcttacaccggacttactggaacagcgtatcggtcgtctggaccgc
attggccagacaaaagatattcaaatccacgtgccttacatcagtcagtctgcccaggaa
gtgctgttgaaatggtatcgtgatgggttaggtgctttctcacatacctgccccaccggc
tcaggtgtattcgaagaagtgcaggcgcaattggtggaagcctgtcttgaccctgaaaac
gaagcgctggtttctgaactggttaccaccagtaaagccctgaatgacacactgaaagcc
aaactggatgccggccgcgatcgtctgctggaattgaatgcgtcaggggaaggtaaggta
gacgggctgctcgaagaaattgttgagcaggatgcatctgttgagctgtcccgcttcatg
ggccgcctgtttgatgcccttggcgttaatcaggaagagaaaggtaatgactgtttcatt
ctgaccccgtcagaatcgatggttaaccaccttccgggtctggatcctgaaggtatgaca
gtcacctatcgccgccgcgttgccaccacgcttgagcatgtgcactttttaagctgggac
catccgctggtccacaatgccatcgatatggtattaactgatgtactgggtaaagccagt
gtcgggtttatcgctgataaaggtttgccgaaaggggcattctggctggagtcactgttt
gtacttcaggcaaatgcagatcgccagttgcaaccgggccgcttcctgccggcaacaccg
ctgcgcatttgtaccgacggccacggtaaaccggtaaacctggtctttgatgccccccgt
aaagccggcagaaaaattgttcagcaactgattcaggcattgcaacaagcgctgacactg
cacattgaaaaagccaccgcagcggctcagcaacaagcgaaccaaattcagcatgatgcc
attgaaaccatgcaggcaacccttagcgcagaagcccgccgcttacgggatttacaggca
cagaatccgtcaatacgggacagtgaaatcgaatttattgagacccagctgacgggctta
accgccgcgctgcagtctgcatcagttcaactggaagggctgcgtatcgtggtgaataat
ccgtga
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