Alteromonas sp. RKMC-009: DS731_03525
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Entry
DS731_03525 CDS
T05653
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alr
Alteromonas sp. RKMC-009
Pathway
alr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DS731_03525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alr03019
]
DS731_03525
03009 Ribosome biogenesis [BR:
alr03009
]
DS731_03525
Enzymes [BR:
alr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DS731_03525
Messenger RNA biogenesis [BR:
alr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DS731_03525
Ribosome biogenesis [BR:
alr03009
]
Prokaryotic type
rRNA helicases
DS731_03525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AYA63144
LinkDB
All DBs
Position
complement(801163..802890)
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AA seq
575 aa
AA seq
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MTNTVELTFKDLNLPESILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEAKLPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHINRKTLNLSELKFLVLDEADEMLRMGFIDDVETILSHAPE
EKQTALFSATMPGPIKKITQRYLKNPKHVKIESKVSTASTIRQRYCQVAPHHKLEALTRI
MEVEPFDGMIIFVRTKTATVELSDKLSARGYDVEPLNGDIPQNARERTVEKLKQGTIDIL
VATDVVARGLDVERVSHVVNFDIPYDTESYVHRIGRTGRAGRSGEAILFISHREKRLLFA
IEKTTRQPIERMPIPSINELNETRLSKFKQAVSEATSDDSLESLMPIVESLQQETEASPE
RLIAALIKLAQGDEPLLLKESDRPDLHSKPQREDRGDRGPRDRGDRGPRGDRGDRRGKRA
SSKPEAGMQRYRIDVGHTHGAKPGNIVGAIANEGNINSKNIGAIEIYDKFSTVDLPQGMP
RETKELLQNTRVAGQKLSIREWSDTPPKRRAPRKN
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatactgtcgagctgacatttaaagaccttaacttaccagaaagcatactacag
gctctggagaaagttggctatgaaaagccatcccctatccaggctgaaagtatcccgcta
ctgcttgaaggccatgacctgttaggtcaggcgcaaacaggtacaggtaagactgcggcc
tttgcccttccaatgctcgcaaatatcgacccggaagcaaagttaccgcaattgctggta
cttgctccaacccgcgaactcgctattcaggtggcggaagcttttcaggtttatgccagc
ttttcgcaaaaaattaaggtactgcctgtatacggtggtcagtcttacgataaccaaatt
cgtcagcttaagcgtggcgtacaggttgtcgttggtaccccgggccgaatcatcgaccat
attaaccgcaaaacattaaacttaagtgaactgaagtttctggttctcgacgaagctgac
gaaatgctgcgcatgggcttcatcgatgatgttgaaaccatcttaagtcatgctccggaa
gaaaagcagacagcgctgttctcggcaaccatgcccggaccaatcaaaaagattacccag
cgttatctgaaaaatccgaagcacgttaaaattgaatcgaaagtttcaacggccagcacc
atccgtcagcgttactgccaggttgcaccacaccataagctggaagcgttaacccggatt
atggaagtggagccgtttgacggcatgatcattttcgtacgtacgaaaacggcgactgtt
gagttatctgacaaattgtctgcccgtggctacgatgttgagccactgaacggtgatatc
ccgcagaatgcccgtgaacgcacagtagaaaaactcaagcagggaactatcgacattctg
gttgcaacagacgttgttgcccgtggtcttgacgttgaacgtgtaagccacgttgttaac
tttgatattccttacgatacagagtcatacgtacaccgtatcggtcgtacaggccgtgca
ggtcgtagtggtgaagcaattctgttcatttctcaccgtgaaaagcgtttacttttcgcc
attgagaaaaccacgcgtcagcccattgagcgtatgccgattccttcaattaatgaattg
aacgaaacgcgcctgagcaagttcaagcaagcggtgagcgaagcaaccagtgatgacagc
ctggaatctctgatgcctatcgtggaatctttgcaacaggaaacagaagcttcgcctgag
cgtttgattgccgcactgatcaaactggcacaaggtgacgaaccgctgttactgaaagaa
tctgaccgtcctgatttgcacagcaaaccacaacgggaagatcgtggtgaccgcgggccc
cgtgatcgtggcgaccgtggcccccgaggtgacagaggcgaccgtcgtggtaagcgcgct
tcaagcaaacctgaagccggcatgcagcgttaccgtattgatgttggtcatactcacggt
gccaagcccggtaacattgttggtgcaattgctaacgaagggaatatcaacagcaagaac
attggtgctatcgaaatttatgataaattcagcaccgttgatttgcctcagggcatgccc
cgtgaaaccaaagagctgctgcagaacacccgcgtagccggacagaagttgtctatccgc
gagtggtcagatacgccgccaaagcgtcgggctccccgcaaaaactaa
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