Alteromonas sp. RKMC-009: DS731_04295
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Entry
DS731_04295 CDS
T05653
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
alr
Alteromonas sp. RKMC-009
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
alr03009
]
DS731_04295 (rlmD)
Enzymes [BR:
alr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DS731_04295 (rlmD)
Ribosome biogenesis [BR:
alr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DS731_04295 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
RrnaAD
Methyltransf_11
Methyltr_RsmB-F
PCMT
MTS
TRM5-TYW2_MTfase
PabTrmU54_TRAM_dom
Methyltransf_15
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
AYA63286
UniProt:
A0A385MS27
LinkDB
All DBs
Position
982028..983362
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AA seq
444 aa
AA seq
DB search
MVSFYKPAKSSKKTQTGKTVTVQRWDMTGQGVCNDSKPVLFVDGALPGEKVDVLVTQQQK
RFARASVKKILTSSPHRVTPFCDLADRCGGCQLQHADADAALTYRQEALDSWWKLQFGLD
HIPWTAAVTGERRGYRRKARLATDARNDKQFKLGYREEQGKQVVDVDQCPVLQPGLSALI
APLKALLSGHSARKHVGHVTLLAGDNVNAVSVRLTKPMSPAFGDALIAFAVEHKVNMTVE
GQEGTLTLHKEAELYCTTEPGLSLSPAADDFVQVNGPVNAKMVAQAMEWLNPQPGEKIAD
WFSGLGNFSLSLAKRGAQVQAVEGVAEMVQRAKENASKQGVDNVNWLHLDLSDEQAVAQA
LSGGFDKLLLDPSREGAYAVCETLTRQRVKSILYVSCNPGTLTRDAQCLLASGYAIERVG
LIEMFPQTRHLEVMMLLTDHKNKA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggtcagtttctataagccggcaaagtcgtcgaaaaaaacacaaaccggtaaaaccgtc
accgttcaacgttgggacatgaccggacaaggtgtgtgtaacgacagcaaaccggtactg
tttgttgatggtgcgctgcctggcgaaaaagttgatgtgctggttacacaacaacaaaag
cgcttcgcaagagcgtcggtaaaaaaaatcctcacgtccagtcctcatcgggtaacaccc
ttttgcgacctcgctgatcgttgtggcggttgccagttgcaacatgcagatgccgatgcg
gcactgacatatcgtcaggaagcgctggatagctggtggaaattacagtttggtttagat
cacattccctggaccgcagcggttaccggagaacgtcgcggttatcgccggaaggcccgg
cttgccacagacgcacggaatgacaaacagtttaagttaggttaccgggaagagcagggt
aagcaggtggtggatgttgaccagtgtcctgtactgcaacccggattatccgcgttgatt
gcgcctttaaaagcactgctatcgggtcattctgcccgtaaacatgtgggccatgtcacc
ttacttgccggcgataatgtgaatgctgtttctgtgcggctgaccaaacccatgtccccg
gcattcggcgatgcactgatagcatttgccgttgagcacaaagtaaacatgaccgtggaa
ggacaggaaggcacgcttacattgcataaagaagcggagctgtattgcaccacagagccc
ggattgagtttgtctccggcggcagatgattttgttcaggtaaacgggccggttaacgct
aagatggtggcgcaggccatggaatggttgaatccgcagcccggtgaaaaaattgctgac
tggttcagtggtctggggaatttttccctgtcgctggcaaaacggggagcacaggtgcag
gccgttgaaggcgtggctgaaatggtgcagcgggctaaagaaaatgcgtcaaaacagggc
gtagacaatgtgaactggttgcatctggatttgtctgatgaacaggcggtagctcaggct
ctgagcggcggttttgataaactgttgctggatccctcgcgggaaggcgcgtatgccgtt
tgtgaaaccctgacacgacaacgggtaaaatcaattttgtatgtttcttgcaatccgggt
actctgacaagagatgcgcagtgccttctggcgtccgggtatgcaatcgagcgcgtgggg
ctcattgaaatgtttccccagacccgacatctggaagtcatgatgttattaacggaccac
aagaacaaagcataa
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