Alteromonas sp. RKMC-009: DS731_06180
Help
Entry
DS731_06180 CDS
T05653
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
alr
Alteromonas sp. RKMC-009
Pathway
alr03030
DNA replication
alr03430
Mismatch repair
alr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DS731_06180 (dnaE)
03430 Mismatch repair
DS731_06180 (dnaE)
03440 Homologous recombination
DS731_06180 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alr03032
]
DS731_06180 (dnaE)
03400 DNA repair and recombination proteins [BR:
alr03400
]
DS731_06180 (dnaE)
Enzymes [BR:
alr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DS731_06180 (dnaE)
DNA replication proteins [BR:
alr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DS731_06180 (dnaE)
DNA repair and recombination proteins [BR:
alr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DS731_06180 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AYA63623
UniProt:
A0A385MTE1
LinkDB
All DBs
Position
1416723..1420205
Genome browser
AA seq
1160 aa
AA seq
DB search
MSSPFIHLRVHSDFSMMDGLNKVKPILAQVEAFNMPAVAITDQMNMCGLVKFYSEAHNRG
IKPIIGTDFWVQNDVLNEEPFRLTLLAMNNEGYKNITLLISKGYLRGAVHHKTVIDQAWL
AEHAEGVIVLSGALHGDVGIALTKNNQKMLADSLAFYQQHFADRFYLELIRTGRPGEEDY
LHQAVAVAEEYGLPVVATNEVCFIEQAGFEAHEIRVAIHDGYTLEDPRRPKRYSEQQYLR
SSDEMVELFSDIPEAIENTVEIATRCNVTVRLGEYFLPQFPTGGMTTEDFLVKKSEEGLE
ERLEFLFPDEAVRAEKRPEYDDRLKVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEL
YGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPSDPGMTLGKAFEVEPRL
PELYNDDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFAPLYCDDEGKNPVTQF
DKNDVETAGLVKFDFLGLRTLTIIQWALDMIKEGQGVDVDISAIPLEDKKSFRSLQAAET
TAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD
ADYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAMGKKKPEEMAKQRS
TFEDGARDNNIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHYPAEFMAA
VMSADMDNTDKIVTLVDEVDRMGMTILPPDLNVGRYKFTVDEHGRIVYGIGAIKGVGEGP
IEAIIEAREQQGNFTDLFDFCAKVDLKRVNKRVLEKLVLAGAMDNLGPQDGKGPHRASIM
ASLPEAIAAADQHAKAESYGQSDMFGLLTTEPDDVKQAFADVPYWPEKVWLDGEKDTLGL
YLTGHPINQYADEIKHYSDGRLVDLKPTGKDQMSTAVGLVLGVRVMTNKKGRRWAIVTLD
DKSARMDVRFFPDMYEKYESILETDRILLIKGQVSFDDFSGGNTISARDAMDIVQAREQN
AKALMLELDTVQIDENRISSLQAILQTYRGGSCPVQMRVVHPDAEAVLACGAQWYVTPED
QLLHELKQCLGEQSVAMCYH
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgccgtttattcatcttcgcgttcacagcgacttttcaatgatggatgggtta
aacaaggttaaacccatcctcgcgcaggttgaagcctttaacatgcctgcggtggctatt
acagatcagatgaacatgtgtggtctggttaaattctattctgaagcccataaccgcggt
atcaaacccattatcggcaccgacttctgggtgcagaacgatgttctgaacgaggaacct
ttccgcctcactttgctggccatgaacaacgagggctataaaaatattaccctgttgatt
tcaaaaggctatctgcggggggcggtgcaccataaaacggtgatagaccaggcctggctg
gcagaacatgctgagggcgtgattgtgctttccggagcactgcacggcgacgtcggtatt
gctctgaccaagaacaaccagaaaatgctggcggactccctggcgttttatcagcagcat
tttgccgatcgtttttatcttgagcttatccgcaccggccgtcccggcgaggaagactac
cttcatcaggctgtggctgtagctgaggaatacggtttgccggtggtggctacgaatgaa
gtgtgtttcattgaacaggcaggattcgaggcccatgaaatccgcgtagccattcacgac
ggttacacactggaagatccccgtcgccccaaacgctacagcgaacagcaatatctgcgt
agcagcgatgaaatggttgagctgttcagtgatattccggaagctatcgaaaataccgta
gaaattgctacacgttgtaatgtcactgtaaggcttggagagtatttcctgccccagttc
cctaccggtggtatgacaacggaagattttctggttaaaaaatcagaagagggactggaa
gagcgtcttgaattcctgttccctgatgaagccgtcagagcagaaaagcgtcctgaatac
gacgaccgtctgaaagtagaactcgacgtaattaaccagatggggttcccgggttacttc
cttatcgttatggagtttatccagtggagtaaggacaacgggattccggtaggaccgggc
cgtggttccggtgcaggctcattagtggcttatgcgctgaaaattaccgatctggacccg
ctggaatttgacctgcttttcgaacggttcctgaaccccgaacgtgtatctatgcctgat
ttcgacgtcgacttctgtatggatcgccgcgatgaggttattgaccacgtggccgagctt
tacggccgtcaggcggtatcacaaattatcaccttcggtacgatggcagctaaagctgta
gtgcgggatgtgggccgggtgcttggtcatccctacggtttcgttgaccggatttccaag
ctgatcccgtccgatcccggtatgactcttggcaaagcctttgaggtagagccccgttta
ccggaactttataacgacgatgaggaagtcaaagaccttatcgacatggcccgtattctg
gaaggtgttacccgtaatgccggtaaacacgccggtggtgtggttattgcgcctaccact
atcaccgacttcgcaccgctttactgtgatgatgaagggaaaaaccctgtcacccagttc
gacaaaaatgacgtcgaaacggcaggtctggttaaattcgacttcctcggtctgcgtaca
ctgaccattatccagtgggcactggatatgatcaaagaaggtcagggagtggacgtcgat
atcagtgccatcccgctggaagataaaaagagtttccgttcactgcaggcggcagaaacc
acggcagtattccagcttgaatcccgcgggatgaaagagctgatcaagcgactgaaaccg
gactgtttcgaagatattatcgcactggtggccctgttccgtccgggtccgctgcaatca
ggcatggtagacaactttattgaccgtaagcacggtcgtgaagaaatctcttatccggat
gctgattatcagcatgagtgtctgaaagaaattcttgagcccacctacggtatcatcctg
tatcaggaacaggttatgcagattgcccaggaaatgtcggggtacagtctgggtggcgct
gacttgcttcgccgtgcgatgggtaagaaaaaacctgaagaaatggcgaagcagcgctca
accttcgaggatggcgcaagagacaacaacatcgacggcgagctggcgatgaaaattttc
gatctggtagaaaaatttgccggatacggatttaacaaatcgcactctgcggcctatgca
ctggtgtcataccagacactgtggctgaaagtacattaccctgctgaatttatggcggcg
gtaatgtcggcggatatggacaacaccgacaagatagtaacgctggtagatgaagtcgac
cgtatggggatgaccattttgccgccggatttgaatgtcggacggtataaatttacggtt
gatgagcatggccgtattgtttacggtatcggtgctattaaaggggtaggtgaaggcccc
attgaagccattattgaagcccgggaacaacaaggtaattttactgatttgtttgatttc
tgtgctaaagttgacctcaaacgggtgaacaagcgggtgctggaaaagctggttctcgcc
ggcgccatggataatcttggaccgcaggacggcaaggggccgcaccgtgcatcgattatg
gcctctttacctgaagctattgctgctgcagatcaacatgcaaaagcggaatcctacgga
cagtctgatatgttcggtttgctgacgacagagccggacgatgtgaagcaagcctttgcg
gatgtgccgtactggccggaaaaagtctggcttgatggtgaaaaagacactctgggcttg
tatctgacagggcatcctattaatcagtatgctgatgaaattaagcattactctgatggt
cgcctggttgacttaaaaccaaccggaaaagatcagatgtccaccgccgttggtctggtg
ctgggcgtcagggtaatgacaaacaaaaaggggcgtcgctgggccattgtgactctcgac
gacaagagcgcgcgcatggatgtacgttttttccccgatatgtacgaaaaatatgagagt
attctcgaaactgaccgtatcctgttaataaaaggacaggtcagctttgatgatttctcc
ggtggcaatacaatctctgcccgtgatgcaatggatattgttcaggccagagaacagaac
gcaaaagcactgatgttggaactcgacaccgtgcaaattgatgaaaacagaatatcgtcg
ctacaggcaattcttcaaacgtaccggggcggcagttgtccggtacaaatgcgtgtagta
cacccggatgcggaagcagtgctggcctgtggcgcacaatggtatgtgacgccggaagat
cagctgttgcacgaattaaaacagtgtctgggtgagcagtcagtcgccatgtgttatcac
tga
DBGET
integrated database retrieval system
