Alteromonas sp. RKMC-009: DS731_10250
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Entry
DS731_10250 CDS
T05653
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
alr
Alteromonas sp. RKMC-009
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alr03032
]
DS731_10250
03400 DNA repair and recombination proteins [BR:
alr03400
]
DS731_10250
Enzymes [BR:
alr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DS731_10250
DNA replication proteins [BR:
alr03032
]
Prokaryotic type
DNA Topoisomerases
DS731_10250
DNA repair and recombination proteins [BR:
alr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DS731_10250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AYA64350
UniProt:
A0A385MVV6
LinkDB
All DBs
Position
2299157..2300155
Genome browser
AA seq
332 aa
AA seq
DB search
MEKSELNIVRQRRGKGFSYCYESGRQLQDKRKLNRIRKMIIPPNWRDVHIAGDASAPLQA
TGIDAKGRKQYIYHDNWHKQRQQEKFSKLSDFADALPEFRQFCWRAVDTKGWSREKSLAL
VCLMLDHTGLRAGNKVYSQQNSTFGLTTLRRQHLEKEGKAVSLSFTGKHGKERHVDISDP
KLANLVCDSAQAQGYAIFRYTGDDGRWQDVDSGDVNAFIHSRLGDDFSCKDFRTWGASRF
GLLSLPDVENLYLQNQRRRWDTTFVKHIASMLGNTPSVCRQYYIHPKLISLCEEEENRQQ
TLMEIEKILEKNKPGNKLTSAIEQRLAQIIVS
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagtgaattgaatattgtgcgtcagcgcagaggtaagggcttcagttattgc
tacgagagtggcaggcaactgcaggataagcgcaagcttaatcgcatccgcaaaatgata
attcctcctaactggcgtgatgtacacattgcgggtgacgcttccgcacctctgcaggca
accggtatcgatgcaaagggtcgcaaacaatatatttatcatgataactggcataaacag
cgtcagcaggaaaaattttcgaaactcagcgactttgcagacgctttaccggaattccgg
caattctgctggcgtgctgtagacactaaagggtggtcccgcgaaaagagtctggccctt
gtttgcctgatgttagaccacactggcttgagggcaggtaataaggtctattctcagcaa
aacagtaccttcggattaaccacattacgcaggcagcatcttgagaaagagggtaaagcg
gtgtcgctgagttttaccggaaagcacggaaaggagcgtcatgtagatatctcagatccg
aaattagccaacctggtgtgtgacagtgcgcaggcgcagggctacgcaatttttcgttac
accggtgatgatggccgctggcaggacgttgacagtggtgacgtaaatgcctttattcac
tcccgtcttggcgatgatttttcctgcaaagatttcagaacctggggggcatcccgtttc
ggtctgttgtcactgccggatgtggagaatttgtatctgcaaaaccagcgccggcgctgg
gatacgacttttgttaagcacattgcttccatgctcggcaatacgccctcagtatgccgc
caatattacattcacccgaaactaatttctttgtgtgaagaggaagaaaatcgtcagcag
acactgatggagatcgaaaagatattggaaaagaataaacccggcaacaagctcacttcg
gctattgaacagcgtcttgctcaaattattgtgtcataa
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