Alteromonas sp. RKMC-009: DS731_11945
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Entry
DS731_11945 CDS
T05653
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alr
Alteromonas sp. RKMC-009
Pathway
alr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DS731_11945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alr03019
]
DS731_11945
03009 Ribosome biogenesis [BR:
alr03009
]
DS731_11945
Enzymes [BR:
alr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DS731_11945
Messenger RNA biogenesis [BR:
alr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DS731_11945
Ribosome biogenesis [BR:
alr03009
]
Prokaryotic type
rRNA processing factors
DS731_11945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AYA64661
UniProt:
A0A385MVR8
LinkDB
All DBs
Position
2673051..2676242
Genome browser
AA seq
1063 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD
RHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFLSLA
GSYLVLMPNNPRAGGISRRIEGDERTDLKDALSRLDLPDGMGLIVRTAGVGKSYEELEWD
LKVLLKHWEAISEVAESRAAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEEALQH
IELVRPDFANRVKLYKGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQ
DAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLALSIL
RIIEEESIKDNTGQIEAQLPVPVATYLLNEKRKSINVIEKRHNVSLLLIPNPHLDTPHYE
VVRHRPDEVISDASYNVALKEQDETEAYKPAAAPVKREEPALKGLVAPTQAPPAPVAAPA
AKEATAPAATETLFTKLGKWISSVLGGEDKKEEETKTEEKKRSPRNNRNNDNRNRKPRNN
RNRRGKQSENSNERDESKQTQKRQDDKRNSRPKSRRKPQEDKKDKPEQQNQNREAEAQTD
NQEAQPARKKQVAERRKRRDNRRSVRVNKDAADKPATQQPQADKSDTKHSAVEVKEAVTE
TVQTVAPSDTQFATETPASSPEQSRKGPELTQDSPEPTQADAEQSNTSKAKNTDVSASAE
TTEQADSTASEQDASGEENGQKRESRGRSRRSPRHVRAAGQRRKKEQSPAGDVAEDNAPQ
QVSEASEVADSDAATGAVQDELQFDIAHPEEDTQAKKPKSAKPRVRVDGDQLTAVPASPE
QVEINLAAHAESETEQQNTAQETESVTQEAQSSTETPAETQATETVAGVAEKAAPVSETP
VAATAEKEVKSEAVAPVAKPAVAKATFRATSSTGQKSASHPMALPPVVEAVFSDVTAGAM
KDESRPALLVSGKAASVSQATSSASAAMTLPASAPEVAVAEEA
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgttgattaacgcaactcaacaagaagagttgcgcgttgccctggttgatgggcaacgg
ctgtatgatcttgatattgaaagcccgggtcacgaacaaaagaaggcgaatatatacaaa
ggtaagattacccgcgtagaacccagccttgaagctgctttcgtagactacggtgcagac
cgccatggcttcctgcctcttaaagaaattgcccgcacttacttcccgaaaggttataaa
ttcgaaggccgcccgaacatcaaagatgtgattaaagaaggccaggaagttattgttcag
attgataaagaagagcgtggccagaaaggcgcagccctcactactttcctgtcactggct
ggtagttacctggtactgatgccgaataacccccgcgcaggtggtatttcccgccgcatc
gaaggtgatgagcgtacggatctgaaagatgccctgtcccgcctggatttaccggacggc
atgggtctgattgtccgtactgctggtgtaggtaaatcttacgaagaactggaatgggat
ttaaaagtactcctgaagcactgggaagccatttcagaagtcgctgaaagccgtgcggcg
ccattccttatccatcaggaaagtaacgttattgtccgtgccatccgcgactatctacgc
cgtgatatcggtgagatcctgattgataaaaccagcatctatgaagaagccctgcagcac
atcgaactggtgcgtccggactttgctaaccgtgtaaaactgtataagggtgatgtacct
ctgttcagtcactaccagattgaaagtcaaatcgaatcagctttccagcgtgaagtccgt
ctgccttccggcggttcaattgttatcgatccgacagaagccctgacatccatcgacatt
aactctgcccgcgcaacaaaaggcggagatattgaagaaacagccctgaataccaacctt
gaagccgccgacgaaattgcccgtcagttgcgtcttcgcgacttaggtggtctggtagtc
atcgactttatcgatatgacaccggtccgtcaccagcgcgaagttgaaaaacgtatgcag
gatgctgtgcgctcagaccgtgcacgtgttcagctggggcgtatctcacgcttcggcctg
ctggaaatgtcacgtcagcgtttacgtccttctctgggcgagtcagctcaccatgtatgt
ccgcgctgttccggtcacggtacaatccgtggtaccgaatctctggcgctgtcgattctg
cggattatcgaagaagaaagcatcaaagataataccggtcagattgaagctcagttgccg
gtaccggtagccacctacctgctgaatgaaaagcgtaagtcaatcaatgtgatcgagaag
cgccataacgtttcactgctgttgatccctaaccctcacctggacacgccgcattacgaa
gttgttcgccaccgtccggatgaagtcatttcagatgcaagctataacgttgccctgaaa
gagcaggacgagacagaggcctataagccggccgcagcaccggtaaaacgtgaagaacct
gcattgaaaggtctggttgcgccgactcaggctcctcctgctcctgtagcagcgcctgca
gcgaaagaagcaactgcaccggcagccactgaaaccctgttcaccaaactgggcaaatgg
atttcttctgttcttggcggtgaagacaagaaagaagaagaaacaaagacagaagagaag
aagcgtagtccgcgtaataatcgcaataatgacaaccgcaacagaaaaccacgcaacaac
cgtaaccgtcgtggtaagcagtctgagaacagcaatgagcgtgatgagagtaaacagact
cagaagcgccaggatgataaacgtaacagccgtcctaagtcccgccgtaagccgcaggaa
gataaaaaggacaagccggaacagcaaaatcaaaaccgtgaggccgaagcgcaaactgac
aatcaggaagcgcagccagcccgtaagaagcaggttgccgagcgtcgtaagcgtcgtgac
aaccgccgcagcgttcgagtgaataaagacgcagcggataagccagcgacacaacagcct
caggcagacaaatctgacactaaacactctgcagttgaagtgaaagaagccgtcacagag
actgtacagactgtagccccttcggatactcagtttgctacagaaacaccggccagcagc
cctgagcagagtcgaaaaggccctgagctgactcaagacagccctgagccaactcaggct
gacgctgagcagagcaacaccagcaaagctaagaacactgatgtatctgcttctgcggaa
acgacagagcaagcagacagtactgcgtctgaacaggatgcttccggcgaagaaaatggt
cagaagcgtgaaagccgtggccgctcacgtcgttctccgcgtcatgtgcgggcagcgggt
caacgtcgtaagaaggagcagtcacctgccggtgacgtagcagaggacaacgcaccacag
caggtcagtgaggcttctgaagttgcggattctgatgcagctaccggcgcagtacaggat
gaactgcaatttgatattgcacatcctgaagaagatacgcaggctaaaaagccaaaatca
gcgaagccccgtgtacgtgttgacggtgatcagctgaccgctgtaccggcttctcctgag
caggttgagattaaccttgctgcccatgcagaatcagaaactgaacagcagaatactgct
caggaaacggaaagtgttactcaggaagcacagagttcaactgaaacgcctgctgaaaca
caggctacggaaacggtagctggagttgctgaaaaagcagcaccggtatctgaaacccct
gtagctgccacggcagagaaagaggtgaaatctgaagccgtagcacctgttgccaaacct
gcggttgcgaaagccactttcagagcaaccagcagcaccggacaaaaatcagcatcacat
ccgatggcattgccaccagttgtagaagcagtgttcagtgatgtaacagcaggcgcgatg
aaagatgaaagccgccctgcactgctggtgtcaggtaaagcagcatcggtatcacaggcg
acttcatccgcatctgcggctatgacgttaccggccagtgcacctgaagtagcagttgct
gaagaagcctga
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