Alteromonas sp. RKMC-009: DS731_13770
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Entry
DS731_13770 CDS
T05653
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
alr
Alteromonas sp. RKMC-009
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alr03016
]
DS731_13770 (rnd)
Enzymes [BR:
alr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
DS731_13770 (rnd)
Transfer RNA biogenesis [BR:
alr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DS731_13770 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF5327
Motif
Other DBs
NCBI-ProteinID:
AYA66589
UniProt:
A0A385N263
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All DBs
Position
complement(3081026..3082186)
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AA seq
386 aa
AA seq
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MKYTLITDEIALKAVCEKASAAEAVAIDTEFVRTRTLTPQLGLLQLFDGEQLVLIDPLAI
NDLSPFVALMTNPDVIKVLHSCSEDLETFLAAFGVIPAPVFDTQFAASVLGMGATLGYAR
LVELMSDVVLDKGESRTDWLARPLRESQLVYAANDVLYLLPVYLQLKEQIEAAGKFDWVT
QEIAALGEKKAAQIPLEQAYLVLKNTWRLNPEQLTVFRHLAGWRLKVAREKNLALNFVVR
ESQLFDMAVKMPLSRTALSRIEGLQPQTLRRYGETLTALVAEAKSLYEDTPADKQLPRMR
RLIDYPEYKKHLAAIKRLCAMVAAEQGVSEEVVASKKQINQLLKWQWFELDETRVQGLLP
DLLSGWRRPLLEKGLASLLGPLAFTR
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaaatataccttaataaccgacgaaattgcgcttaaagctgtctgtgagaaggcttct
gccgctgaagcagttgccattgatactgaattcgtacgtacccgtaccctgacgccgcag
ctgggattattgcagttgttcgacggcgagcaactggtacttatcgatccgctggcgatt
aatgacttaagcccgtttgtggcattaatgacgaatcctgatgtgatcaaagtgctgcat
tcctgctcagaagatctggaaacatttctggcagcattcggtgtaatacctgcgccggta
ttcgatactcaatttgcagcaagtgtgcttggcatgggcgcgaccctgggttatgcacgg
ctggtggaactgatgagtgacgtggtgctggataaaggggagtcccgcactgactggctg
gccagaccgctacgggaaagtcagctggtgtatgccgccaatgatgtgctgtatctttta
cctgtgtacttacaactgaaagaacaaatcgaagcagccggtaaatttgattgggtaacg
caggaaattgctgcactgggagaaaagaaggctgcacaaattcctctggagcaggcttac
cttgtgctgaaaaatacttggcggcttaatcctgaacagcttaccgtgtttcgccatctt
gcaggctggcggcttaaggttgcccgtgaaaaaaatctggccctcaactttgtggtcaga
gaaagtcagcttttcgatatggcagtaaagatgccgttaagccgcactgcgctgagtcgt
atcgagggattgcagccgcaaaccctccgtcgttacggtgaaacgcttaccgccctggtg
gctgaagcaaaatccctttatgaagatacccccgcagacaaacaattaccccgtatgcgc
cggctgattgactatcccgaatataaaaagcatctggctgctattaagcgcctgtgtgca
atggttgccgcagagcagggcgtgtcagaggaagttgtggcctctaaaaaacaaatcaat
cagctgttaaaatggcaatggtttgaactggatgaaacccgcgtgcaggggcttctgcct
gatttgctgagtggctggcgccgtcctctgctggaaaaggggctggcctcattattaggg
ccgctggctttcacccgttaa
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