Alteromonas sp. RKMC-009: DS731_18515
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Entry
DS731_18515 CDS
T05653
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
alr
Alteromonas sp. RKMC-009
Pathway
alr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DS731_18515 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alr03019
]
DS731_18515 (rhlB)
Enzymes [BR:
alr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DS731_18515 (rhlB)
Messenger RNA biogenesis [BR:
alr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DS731_18515 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AYA65850
UniProt:
A0A385MZW9
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All DBs
Position
4200113..4201396
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AA seq
427 aa
AA seq
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MQTTHLTETHFSDLPINTKVVEALKSANFTHCTPIQALALPPLLEGLDIAGQAQTGTGKT
MAFLVATFHHLLEKAQNDASSQSGPRAIIMAPTRELAVQIYNDAKPLSEHTGLSLGLIYG
GEGYQSQRESLEEGVDIIIGTTGRILDYYKQGVFSLDNIQAAVLDEADRMFDLGFIKDIR
FLFRRMPAATERLSMLFSATLSYRVQELAYEHMNNPTHVQVEPERKTATRVSEELFYPSD
EDKMLLLLTLLEEEWPDKAIVFANTKSGCERVNDWLAADGHRVGLLSGDVPQKKRLSILE
DFTRNNLDILVATDVAARGLHIDKVTHVFNYDLPDDAEDYVHRIGRTGRAGASGAAISFA
CEKYAQNLPAIEEYIQHAIPVTEFDRTALLDDVTAPKPRRRRTPTNRNSSRRGNSRRNSN
NKKPSNQ
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaacacatttaactgaaacacatttttccgacttgcccatcaataccaaagtt
gttgaggcattgaagtctgcaaacttcactcattgtactccaatccaggcacttgcgttg
ccgcccctgctagagggactggatatcgccggtcaggcacaaaccggtacgggcaagaca
atggcatttcttgtcgcaactttccaccatctgttggaaaaagcgcaaaatgacgccagt
agtcaatccggaccgcgcgccatcatcatggcacctacccgtgaacttgcggttcaaatt
tataatgatgccaagccgctcagcgagcacaccggactgtcacttggtctcatttatggg
ggcgaaggataccaaagtcaacgcgaatcgctagaagaaggggtagatattattatcggt
acgacaggacgcattcttgattactacaaacaaggtgtgttctcgctggataatattcag
gcagctgtactcgatgaagcggatcgcatgttcgatttaggctttattaaagatatccgt
ttcctgttccgcagaatgcctgctgccactgaacgcctgagcatgctgttctcagcaacg
ctgagctaccgcgtacaggagctggcctatgagcacatgaacaaccccactcacgtgcag
gttgaaccggaacgcaaaacagccacccgcgtgtctgaagaactgttctacccgtcagat
gaagacaaaatgcttcttctgcttaccctgctggaagaagaatggccggataaagccatt
gttttcgcaaacaccaagagcggttgtgagcgtgtaaacgactggctggcagcagatggt
caccgtgttggcctgttaagcggcgatgtaccgcagaaaaagcgcctgtcgatccttgaa
gacttcaccaggaacaatctcgatatactggtcgccactgacgttgccgcccgtggtctg
cacattgataaagtgacccacgtattcaattacgacctgccggacgatgcggaagattac
gttcaccgtattggtcgtacgggccgtgccggagccagcggtgccgctatcagcttcgcc
tgtgaaaagtacgcacagaatctgccggcgattgaagaatatattcagcatgccattcct
gttaccgaatttgacagaacagcattactggatgatgtgactgcaccgaaaccccgtcgc
cggcgtactccgactaaccggaattcatcccgtcgtggcaacagtcgccgtaacagcaac
aataagaaaccgtcaaaccagtaa
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